Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1588 ATGCACGTGTGGAAGCAGATCAGAGACAGGGAAAGTGGGAAAGCCGATGCAAATAATTTCGCGAATCGCATAAAATCCAATCGTATTTCGCAGCTACAATTGTCGAATCACAAAGACATCGTGTCCCCTCACAAGGGCGCCATAAACTCCCTTCAGATTGATTCCACAGAGGGAAGATATCTTCTCTCCGCCGCCTCCGATGCCTCTGTAGCACTCTACGACGTCCAACGACCCACCGTTTCGGAAGCAGGCGGCGTCGTATCGAAACACAGGTCCATAGTCGTCGTCGACAAGCAGCACCAACAGGGCCACAAATATGCCGTTTCAACAGCCATATGGTATCCCATTGACACCGGCTTGTTCGTCACCGGCTCCTACGATCATCACATCAATGTTTGGGATACCAATACCACCCAGGTGGTCGTGAATTTCAAAATGCCTGGTAAGGTTCATAGGACCGCAATGTCCAATTTGTCAACCTCTCACATGCTTATTGCTGCTGCCACCGAGGATGTCCAAGTTCGCCTCTGTGATATCGCTTCTGGGGCTTTTGCTCACACCTTGTCCGGTCACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGATTGTGGTTACTGGGGGGTGTGATGGTGCAATACGATTTTGGGACATCAGGCGTGCTGGTTGTTTCCAAGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCACCTATACCCAAACGCTCCATCACAACTAAGCCTTTTATCACCTCGCAGGATTCAAGTACAAAATCACGCGCTGCTCAAAAGAAACATGCTAATGGAAGTGGTGGTAGCAGACAAGTACCAGTTGGCAGAGTTCCATCCAAGGGAGGACCAATGAAGCAGAGGTTACATCCAGGAATGTTGTCTACTCAGGATCGTGCTACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCTACAGAGGATGGCATGTATCTACTAAGCGCAGGGTCTGATTCAAGACTGAGGTTGTGGGATGTTGAATCTGGCTGCGACACACTTGTGAACTTTGAAACTGTTCGCCTGCAAATAAACAAACCTCTTCAATTAGCCACCACGCGAGATTCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTTAAAGCATTTGACATGTGGTCTGGGAAAACACACACAATATTACGTGGCCACTATGAAAGTGTGAACTCTTGCTGGTTTAATCAACAGGATCAGGAACTGTACACGGGTGGAAATGACAGACAAATTCTTGTATGGTCACCTGCTAGATCAATCGCTTGTGAAATGGACGAAGGGCCTGCTGAGGATCAGGATAACTGGAGTAGCTGA 1350 0.477 MHVWKQIRDRESGKADANNFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVALYDVQRPTVSEAGGVVSKHRSIVVVDKQHQQGHKYAVSTAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAATEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWIVVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRPPIPKRSITTKPFITSQDSSTKSRAAQKKHANGSGGSRQVPVGRVPSKGGPMKQRLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCDTLVNFETVRLQINKPLQLATTRDSTLVFVPCMRSVKAFDMWSGKTHTILRGHYESVNSCWFNQQDQELYTGGNDRQILVWSPARSIACEMDEGPAEDQDNWSS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1588 449 MobiDBLite consensus disorder prediction 238 299 - -
Aed4g1588 449 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Aed4g1588 449 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Aed4g1588 449 Pfam WD domain, G-beta repeat 102 134 IPR001680 GO:0005515
Aed4g1588 449 Pfam WD domain, G-beta repeat 393 427 IPR001680 GO:0005515
Aed4g1588 449 Pfam WD domain, G-beta repeat 309 340 IPR001680 GO:0005515
Aed4g1588 449 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Aed4g1588 449 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Aed4g1588 449 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Aed4g1588 449 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Aed4g1588 449 SUPERFAMILY WD40 repeat-like 41 429 IPR036322 GO:0005515
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 83 IPR001680 GO:0005515
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 427 - -
Aed4g1588 449 Gene3D - 4 271 IPR015943 GO:0005515
Aed4g1588 449 Gene3D - 287 430 IPR015943 GO:0005515
Aed4g1588 449 MobiDBLite consensus disorder prediction 250 275 - -
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 230 IPR001680 GO:0005515
Aed4g1588 449 SMART WD40_4 94 134 IPR001680 GO:0005515
Aed4g1588 449 SMART WD40_4 181 221 IPR001680 GO:0005515
Aed4g1588 449 SMART WD40_4 298 340 IPR001680 GO:0005515
Aed4g1588 449 SMART WD40_4 388 427 IPR001680 GO:0005515
Aed4g1588 449 SMART WD40_4 34 74 IPR001680 GO:0005515
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 344 - -
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 427 IPR001680 GO:0005515
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Aed4g1588 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 137 - -
Aed4g1588 449 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 449 IPR042238 GO:0006283
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1588 120 229 Miscellaneous Gene Families AT5G08390 25.893 7.77e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1588 K10570 - gmx:100790433 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1588 4 20667042 20670619 Aed4g1588 4 20667042 20670619 ECH