Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1564 ATGTCGCAACGTTCATCATCTGTGTTCAACAACGATCATCTATCTCCTACGTTGTCGTCTCCACGACCCTCCGCCATGTCCCGGTTCTTGTCGCACACCCAAAACCCTGGTCAAACCCTAGAAGATGCTTTTTCTCGTCTCTTCGTCTCTTCGCCTTCCTTCAACCCCCTCCCTTTTGATTTCGCCTCCGATACCCCTTTTGGCGTCAACAACCCCTCAAAGATTCTCCCTTGTAACGGTTGGGGTCGTGGGGTTCCCACTCCTCAAAGTTCCAATCTTTGGCACCCCACATTCACTGCCAACAATTCTTCTTCTTATTATTATGATGATGGCTTTGTTGATTCCAAACCTTTCATGAGGCAAAGAGAAAACCCTCCCACATTTGGTGGCGGCGCTTTTCCCATTGCGCCACTCTCCAATGGGACGCAACAGAAAACCCCTGATGCTGGTTTCTTGAACGGTAACGGGTCCAATAATAATCTGGGGTTTAGTAGTGGCGAAGAAAGGCGGTTCCGATGGTTCAATAATTTGCGGGGGAGGGTTATGTTGTTGGCCAGGGATCAACATGAATGTAGGACTTTGCAGGAGACTATGAAAAAATTGACAAGAGAAGAGTTTTGTGTCATCTTCTTGGAACTGATTAATCACGTGGCTGATTTGATTGTTGACCCCTTTGGAAATTATGTTGTTCAGAGGATGGCCGAAATCTGCAGTGAAGAGCAGCTGAGTCAAATCGTTGTAAGCGTGACTCGGTGTAATTTCCAGCTGGTCAGACTTTGTCTAAGCCCGCATGGAACCCGCGCTGTTGAGAAACTATTGGAGCATGTTAGCACCCAGGAGCAACGAGATCTTGTTTTGTCAGCTATTAGCCCCGGTGCTGCTATATTGGCTAAGGATGTCAATGGTCATCGGGTTCTTTTGCATTGTCTTAAACAATTCTCTGGAGAAGACACCGAGAATCTTCTGAATGTGGTGGCAAACAAGTGTTTTGAAATTGCAACAGACAAGACGGGGTGTGTTGTGCTGCAGCAATGCATTAATCATGCAGAGGGAGAAACAAAAATGAAGCTGCTTGCTGCTATCATATTACATGCTTCACTCTTAGCAGAAGACTGTTATGGCAATTATGTTGTGCAACATTTATTGTCTCTGAAAGTAATAGGAGTTGCAGAATCTCTACTGAGACAGCTTGAAGGAAGATTTTTCTATCTTGCCTGCAACAAATATGGAAGTAATGTAGTGGAGAAATTCCTTCAAGACTCGGGTGAACTACATTCATCGTTTATTGTTTTGGAGTTGCTCCACAATACAAATGTTGCAATGCTTCTTGTAGATCCATATGGAAATTATGTCATCAAATCAGCACTATCAGCATCTAAGGGTCAAGTTCGGAATGCCTTGGAGCGACTCATCAAACTAAATTGCCTGATGATGCAGAGTAACCTCTATGGAAAAAAGTTACTTGCTTGGTTTGAAAAGGGGAAAATATAA 1491 0.442 MSQRSSSVFNNDHLSPTLSSPRPSAMSRFLSHTQNPGQTLEDAFSRLFVSSPSFNPLPFDFASDTPFGVNNPSKILPCNGWGRGVPTPQSSNLWHPTFTANNSSSYYYDDGFVDSKPFMRQRENPPTFGGGAFPIAPLSNGTQQKTPDAGFLNGNGSNNNLGFSSGEERRFRWFNNLRGRVMLLARDQHECRTLQETMKKLTREEFCVIFLELINHVADLIVDPFGNYVVQRMAEICSEEQLSQIVVSVTRCNFQLVRLCLSPHGTRAVEKLLEHVSTQEQRDLVLSAISPGAAILAKDVNGHRVLLHCLKQFSGEDTENLLNVVANKCFEIATDKTGCVVLQQCINHAEGETKMKLLAAIILHASLLAEDCYGNYVVQHLLSLKVIGVAESLLRQLEGRFFYLACNKYGSNVVEKFLQDSGELHSSFIVLELLHNTNVAMLLVDPYGNYVIKSALSASKGQVRNALERLIKLNCLMMQSNLYGKKLLAWFEKGKI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 323 359 IPR001313 GO:0003723
Aed4g1564 496 MobiDBLite consensus disorder prediction 1 35 - -
Aed4g1564 496 SUPERFAMILY ARM repeat 174 492 IPR016024 -
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 401 434 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 296 325 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 216 246 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 181 214 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 438 463 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 255 289 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 328 362 IPR001313 GO:0003723
Aed4g1564 496 Pfam Pumilio-family RNA binding repeat 367 382 IPR001313 GO:0003723
Aed4g1564 496 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 147 490 - -
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 396 431 IPR001313 GO:0003723
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 360 395 IPR001313 GO:0003723
Aed4g1564 496 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 155 495 IPR033133 GO:0003723
Aed4g1564 496 SMART pum_5 360 395 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 434 469 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 396 431 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 251 287 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 212 247 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 288 323 IPR001313 GO:0003723
Aed4g1564 496 SMART pum_5 324 359 IPR001313 GO:0003723
Aed4g1564 496 Gene3D - 162 495 IPR011989 -
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 251 287 IPR001313 GO:0003723
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 432 472 IPR001313 GO:0003723
Aed4g1564 496 ProSiteProfiles Pumilio RNA-binding repeat profile. 212 248 IPR001313 GO:0003723
Aed4g1564 496 PANTHER PUMILIO HOMOLOG 15 147 490 - -
Aed4g1564 496 Coils Coil 184 204 - -
Aed4g1564 496 CDD Pumilio 179 489 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1564 Aed-Chr4 20512124 20514672 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1564 - - gmx:100795545 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1564 4 20512124 20514672 Aed4g1564 4 20512124 20514672 ECH