Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1067 ATGAACTTTCGGTTCCAGAACCTATTGGGCGCTCCCTACAGAGGGGGCAACGTTGTAATTTCCAACAACACCGTTCTACTCTCCCCCGTCGGTAACCGCGTGGCCGTCACCGACCTCCTCAAGTCCCAAACCACCACCCTCCCTATCCAGTCCTCCTCCAACGTCACCCGCATCGCCGTCTCCCCCGATGGCACGTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCTCTTCATCAATCTCCGCCGCCGCGCCCTCCTCCACCGCATCACCTTCAAGCACCGCGTCGCTGCCGCCGAGTTCAGCCCCGACGGTGCCCTCATCGCCGTCGCCGCCGGGAAGCTCGTCCAGATCTGGCGCTCCCCGGCCTTCCGCCGCGACTTCTTCCCCTTCGAGCTCGTCAGGACCTTCGCGGACTTCGACGCGAAGGTCACCTCCCTCGACTGGAGCCCCGACTCGAAGTTCCTCAACGTCGGGTCAAAGGATTTGACCGCGAGAATCTTGTGCTTGAAGAAATTGACCATCGGTGGTGTTAAGAAAAGGCCTTTTTTGCTCCTAGGGCATAGAGATTCTGTTGTAGGTTCGTTTTTTGGCGTCAATTCGAAAACTAATAGGGTTTTTAAGGCTTATACTGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTCACTCCCGATGATGATGGTGGTGAGAGTGAGGGTTCAGAGCCGCCCTCGCCGGGGACACCAGAGAGGAACATGGAAGAGAATTTGGAGGTTAGTGAGAATGATGGTGTGAAGAAAAGAAAGAAAATTGATGTTGAGGATGGTGATGATGATTACTTGAGTAGAGGGAAGTGGGAGTTGTTGAGGAAGGATGGGTTTATGCAGGGGTCAGCGAAGGTGACAGCGTGTGATTATCATAGAGGGTTGGATATGGTGGTTGTTGGATTTTCTAATGGTGTGTTTGGGTTGTACCAGATGCCGGATTTTGTGTGCATTCACTTGTTGTCGATTTCGAGGGAGAAGATTACCACTGCGGTTTTTAATGAGCTTGGGAACTGGTTGACCTTCGGCTGTGCCAAATTGGGGCAGCTTCTTGTGTGGGAGTGGAGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCACTACTTTGATGTGAACTGCATTGCGTATTCACCAGACTCGCAGCTCCTTGCCACCGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCAGGCTTTTGCTTTGTTACATTTTCTGAGCACACTAATTCTGTTACGGCTCTACATTTTCTGCCAAGTAACAGCGTCCTGCTTAGTGCATCTCTGGATGGGACCGTCCGTGCATGGGACTTATTACGTTACCGGAATTTTAAGACGTTTACAACTGGTTCTCCAAGGCAGTTTGTTTCTTTGACAACTGATTTAAGTGGTGAAGTGATATGTGCTGGCACTTCAGACTCCTTTGAGATTTTTGTTTGGTCAATGAAAACGGGCCGCTTGATGGATCAGCTTAGTGGTCATGAAGCTCCTGTTCATGGACTAATGTTTTCTCCTACAAATGCCGTCTTGGCTTCATCATCATATGACAAAACTATTCGGCTGTGGGATGTCTTTGATTCAAAAGGAGCAGTTGAGACATTTCCTCACACACACGATGTTCTTACGGTTGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGACAAATTCATTTTTGGGACCCAATAGATGGTTTGCTAATGTACACCATAGAAGGTTCTAGAGATATTGCCGGTGGGCGTCTTATGACTGACCGTAGATCAGCTGCTAACTCAACTTCAGGGAAGTTCTTTACATCCTTGTGTTATTCAGCTGATGGAAGCTATATATTAGCTGGGGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTTTTGCTTCGACGTTTCCAGATAACTCACAATCTCTCATTAGATGGAGTGCTCGACATTTTAAACTCAAAGAATATGACAGAAGCTGGCCCACTAGATTTGATTGATGATGACAACAGTGACATTGAAGATGGTGTTGACAAACAAACACGAGGGAAGCTGGGATTAGACTTGCCAGGATCCATGCCTAACCGTGGAAGGCCTATTATTCAGACAAAAAGCCTGAGAATTGCTCCTACGGGGCGTAGTTTTGTTGCAGCAACAACGGAGGGAGTTTTGGTTTATTCTGTTGATGAATCATTCATATTTGATCCAACTGACCTAGACATAGATGTTACACCAGAGGCTGTTGAAGAGGCTCTCCGGGAAGATCAACCAAGTAAAGCCTTGATCCTTAGCCTTCGCTTGAACGAGGATTCTTTCATTAAAAAATGTATATTTTCAGTCAGTCCAGTCGATATTCCGGCAGTTGTCACATCAATCCCTTACAAATATATTCAGCGATTAATCGAGGCACTTGCAGATCTTTTAGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTCTCAGGAGCTCTGCAAGGCCCATGGGAATTCTATTCAGCAGAACTCTAGAAATCTGTTACCATCATTAAAATCTTTGCAGAAAGCAATCACTCGAATCCATCAAGATCTAGCAGATACATGTTCCTCCAATGAATATATGTTGCGATATTTATGTTCTTCCGATGCCAAGAAATGA 2667 0.4702 MNFRFQNLLGAPYRGGNVVISNNTVLLSPVGNRVAVTDLLKSQTTTLPIQSSSNVTRIAVSPDGTFLLAVDDRNRCLFINLRRRALLHRITFKHRVAAAEFSPDGALIAVAAGKLVQIWRSPAFRRDFFPFELVRTFADFDAKVTSLDWSPDSKFLNVGSKDLTARILCLKKLTIGGVKKRPFLLLGHRDSVVGSFFGVNSKTNRVFKAYTVTRDCYLFSWGFTPDDDGGESEGSEPPSPGTPERNMEENLEVSENDGVKKRKKIDVEDGDDDYLSRGKWELLRKDGFMQGSAKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCIAYSPDSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNSVTALHFLPSNSVLLSASLDGTVRAWDLLRYRNFKTFTTGSPRQFVSLTTDLSGEVICAGTSDSFEIFVWSMKTGRLMDQLSGHEAPVHGLMFSPTNAVLASSSYDKTIRLWDVFDSKGAVETFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTSLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITHNLSLDGVLDILNSKNMTEAGPLDLIDDDNSDIEDGVDKQTRGKLGLDLPGSMPNRGRPIIQTKSLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDIDVTPEAVEEALREDQPSKALILSLRLNEDSFIKKCIFSVSPVDIPAVVTSIPYKYIQRLIEALADLLENCPHLEFILRWSQELCKAHGNSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSDAKK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1067 888 Pfam Dip2/Utp12 Family 778 883 IPR007148 -
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
Aed4g1067 888 SUPERFAMILY Calcium-dependent phosphotriesterase 545 739 - -
Aed4g1067 888 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Aed4g1067 888 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Aed4g1067 888 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Aed4g1067 888 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 534 IPR001680 GO:0005515
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 448 - -
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Aed4g1067 888 PANTHER WD40 REPEAT PROTEIN 1 885 IPR027145 -
Aed4g1067 888 Gene3D - 467 748 IPR015943 GO:0005515
Aed4g1067 888 SUPERFAMILY WD40 repeat-like 127 580 IPR036322 GO:0005515
Aed4g1067 888 SUPERFAMILY DPP6 N-terminal domain-like 21 220 - -
Aed4g1067 888 MobiDBLite consensus disorder prediction 227 258 - -
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 409 - -
Aed4g1067 888 Gene3D - 248 459 IPR015943 GO:0005515
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Aed4g1067 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 534 - -
Aed4g1067 888 Gene3D - 21 228 IPR015943 GO:0005515
Aed4g1067 888 CDD WD40 326 629 - -
Aed4g1067 888 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Aed4g1067 888 SMART WD40_4 83 120 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 450 491 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 408 447 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 130 169 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 598 637 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 323 363 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 494 533 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 537 575 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 366 405 IPR001680 GO:0005515
Aed4g1067 888 SMART WD40_4 40 80 IPR001680 GO:0005515
Aed4g1067 888 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Aed4g1067 888 Pfam WD domain, G-beta repeat 374 404 IPR001680 GO:0005515
Aed4g1067 888 Pfam WD domain, G-beta repeat 497 533 IPR001680 GO:0005515
Aed4g1067 888 Pfam WD domain, G-beta repeat 547 575 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1067 Aed-Chr4 9987052 9993450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1067 473 648 Miscellaneous Gene Families AT5G08390 21.023 1.55e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1067 K14558 - gmx:100526905 1652.11