Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0945 ATGGCGTCGGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCCGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCAAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATAGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAGGTAGACCAGGCGTCTGCTGCATTTAAGATTGTGTTAGATGGAGATCGTGATAATGTTCCCGCTCTTTTGGGGCAGGCATGTGTTGAGTTCAACCGTGGACGATATTCTGATTCACTTGAGTTGTATAAGAGAGCATTGCAAGTGTATCCCAGTTGCCCAGCAGCTGTGAGACTTGGCATGGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAAGCTCAACAAGCATTTGAGCGTCTAGATCCAGAAAATGTAGAGGCTCTTGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGAGCATTTGAGATATACCCGTACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTAGTGGAGCAACTGACTGAAACTGCATTGTCTGTTACCAATCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGCTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAGTTTGTGTTTCCTTACTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTCATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACAGGAGCTGCATTGGATGCATTCAAAACTGCTCATACTCTTTTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAATATTGGTGTGCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCAGAACAAACATTTAAGGAGGCACTGAGTGATGGTATTTGGCTATCTTTCATCAATGAGGGAAATAAGTCTTCTGCTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGCAATGGTCACCATGTGGAAGTACCTTGGGATAAAGTCACTGCAATATTTAACTTGGCTAGGTTACTTGAGCAGTTAAATGATTCTGGAACTGCTAGCATATTGTATCGCCTTATCTTGTTCAAGTATCCGGACTATATTGATGCATATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACTCTCCGTGCAGCTAGTGATGCAACTGATGGCAAGGACTCATATGCTACTCTTTCTCTGGGAAACTGGAACTACTTTGCAGCAGTGCGCAATGAGAAGAGAAATCCAAAGTTAGAAGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACCAGAGTAGGTCTTTTCATCTTTCTTACTGTTTATGGGAACAAGAGCTATTTTTGCATATTTGATGGTACTTCTCAATTTTTGGTTCTGATTCAGCATCCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTTTTAGCAGAAAAGGGCCATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCGCATGTTTATTTCGCTCAGGGGAATTTTACTTTGGCTGTGAAAATGTATCAAAACTGTTTGCGGAAGTTTTATCATAACACAGACTCCCAAATACTTCTATATTTAGCTCGTACACATTATGAGGCTGAACAGTGGCAAGACTGTATAAAAACGCTACTGAGAGCCATACATTTGGCACCCTCAAACTATACTTTAAGGTTTGATGCAGGGGTTGCTATGCAAAAGTTTTCAGCATCAACACTACAAAAAGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCTGAGTTGCAAAATGCTGTTCGTGTATTTAGCCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAGATTGACACTCATGTTGGATACTGCAACCACTTACTTTCGGCTGCAAGAGTTCATCTTGAAGCAGCTGAGCATGAAGAGCAGCAAGTGCGACAGAGACAAGAACTGGCTCGTCAGGTTGCTTTGGCTGAGGAAGCCCGGCGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGATGAGGTAAAGCGAGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCATTCAAAACGGAGAGAAAGATCAGATGACGAAGATGGAGGAGGGACTGGTGAGAAGAAGAGGAGGAAAGGTGGAAAGAAGAGAAAGAAGGATAAGCACTCAAAATCACGCTATGACACAGAGGAACCAGAAAATGATATGATGGATGAACAGGAAATGGAAGATGAAGAAGGTGACATAAACGACAGAGAGGATCCCCAAACTCAGATGAATGATGATGCTGAGGAAAATGCTCATGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCGGATGCAGATGAGGAAGTGGCTCCACCTTCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCAGAATCTGACGATGACGAACCATTACTAAGGCAGTCAAGCCCAGTAAGAGAAAATTCTGCTGATATGCAGTTGAGTGATGGAGAAATCAGGGATGGGGATAATAATAATAAGACAAATGGAGATGATGGCAGTGATGACGAGAAACAATATTAA 3345 0.4257 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVDQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPSCPAAVRLGMGLCRYKLGQFEKAQQAFERLDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALSVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELAEQTFKEALSDGIWLSFINEGNKSSADAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTAIFNLARLLEQLNDSGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVGLFIFLTVYGNKSYFCIFDGTSQFLVLIQHPSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAARVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDEVKRVQQQEEHFRRVKEQWKSSSHSKRRERSDDEDGGGTGEKKRRKGGKKRKKDKHSKSRYDTEEPENDMMDEQEMEDEEGDINDREDPQTQMNDDAEENAHGLLAAAGLEDSDADEEVAPPSSSIARRRQALSESDDDEPLLRQSSPVRENSADMQLSDGEIRDGDNNNKTNGDDGSDDEKQY 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0945 1114 SUPERFAMILY TPR-like 521 816 IPR011990 GO:0005515
Aed4g0945 1114 MobiDBLite consensus disorder prediction 1087 1114 - -
Aed4g0945 1114 ProSiteProfiles TPR repeat profile. 339 372 IPR019734 GO:0005515
Aed4g0945 1114 MobiDBLite consensus disorder prediction 918 1114 - -
Aed4g0945 1114 Gene3D Tetratricopeptide repeat domain 341 509 IPR011990 GO:0005515
Aed4g0945 1114 Coils Coil 824 844 - -
Aed4g0945 1114 ProSiteProfiles TPR repeat region circular profile. 339 372 - -
Aed4g0945 1114 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 663 IPR031101 GO:0006355|GO:0016570
Aed4g0945 1114 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 689 1069 IPR031101 GO:0006355|GO:0016570
Aed4g0945 1114 SUPERFAMILY TPR-like 106 328 IPR011990 GO:0005515
Aed4g0945 1114 Gene3D Tetratricopeptide repeat domain 7 331 IPR011990 GO:0005515
Aed4g0945 1114 Pfam Tetratricopeptide repeat 303 330 IPR019734 GO:0005515
Aed4g0945 1114 ProSiteProfiles TPR repeat profile. 736 769 IPR019734 GO:0005515
Aed4g0945 1114 Gene3D Tetratricopeptide repeat domain 510 662 IPR011990 GO:0005515
Aed4g0945 1114 Pfam Tetratricopeptide repeat 351 409 - -
Aed4g0945 1114 Pfam Tetratricopeptide repeat 175 233 - -
Aed4g0945 1114 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Aed4g0945 1114 MobiDBLite consensus disorder prediction 996 1015 - -
Aed4g0945 1114 Pfam Tetratricopeptide repeat 741 804 - -
Aed4g0945 1114 SMART tpr_5 197 227 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 772 805 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 128 161 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 555 588 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 339 372 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 736 769 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 521 554 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 302 335 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 589 622 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 445 485 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 373 406 IPR019734 GO:0005515
Aed4g0945 1114 SMART tpr_5 162 195 IPR019734 GO:0005515
Aed4g0945 1114 MobiDBLite consensus disorder prediction 1061 1075 - -
Aed4g0945 1114 SUPERFAMILY TPR-like 262 473 IPR011990 GO:0005515
Aed4g0945 1114 Coils Coil 878 938 - -
Aed4g0945 1114 MobiDBLite consensus disorder prediction 918 972 - -
Aed4g0945 1114 Gene3D Tetratricopeptide repeat domain 685 917 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0945 K15176 - gmx:100794371 1931.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0945 4 8629907 8642861 Aed4g0945 4 8629907 8642861 ECH