Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0905 ATGGCGAGTCTGCTTCGCAACGCAAACATTTCCCTTCTCAAACGTTCTCTCTTCCACTCCGACCTTCTAACGCGCTTTTGCTTTAAACCAGGAGTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAAAAGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACGTGTCTAAGAAAGATTTGGCCCTACAACAAGCTATTGATCAAATCACTGCTGCATATGGAAAAGGATCTATCATGTGGCTTGGTCGTTCTGTGGCACCAAAAAATGTTCCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGAGTTGGAGGTCTTCCAAAGGGCCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCGTTGCATGTGATTGCGGAAGCACAAAAGCTAGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGCGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGACGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCCCTTCGGAAATTGTGCCACTCTTTGTCACTTTCACAGTGTGTATTGGTGAGGGCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTCGGCAAGGGTATAAGTAGAGATGCGGAGCTCATAGAGTTGAGCGTAAAATACAAAATCATAAGGAAGAGTGGTTCATTTTTTGAATATAATGGCCGGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTCCTGGTGGAGAATGATGGAGTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATGCTGAGCTAGAACCGGGGCCAGAGGAGGAGGCGATGGTTGGAGATGTTATGGAACTAATGGAAGAAATGGAATCACTCGATTCTACCGATGAAGCAGCTGCTCCTGCTCATGCTGCTGTTGCTGCAGAAGCTTAA 1284 0.4509 MASLLRNANISLLKRSLFHSDLLTRFCFKPGVLGTSQVLSFSTRKKRSKSDGSDSGEENVSKKDLALQQAIDQITAAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCVLVRAKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISRDAELIELSVKYKIIRKSGSFFEYNGRNFHGKDALKRFLVENDGVQELATKLREKILNAELEPGPEEEAMVGDVMELMEEMESLDSTDEAAAPAHAAVAAEA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0905 427 SMART AAA_5 116 285 IPR003593 -
Aed4g0905 427 ProSitePatterns recA signature. 270 278 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aed4g0905 427 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 407 - -
Aed4g0905 427 Coils Coil 367 387 - -
Aed4g0905 427 Pfam recA bacterial DNA recombination protein 66 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 324 IPR027417 -
Aed4g0905 427 Gene3D - 93 384 IPR027417 -
Aed4g0905 427 PRINTS RecA protein signature 267 295 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PRINTS RecA protein signature 300 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PRINTS RecA protein signature 353 370 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 PANTHER RECA 1 407 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 TIGRFAM tigrfam_recA: protein RecA 63 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0905 427 MobiDBLite consensus disorder prediction 407 427 - -
Aed4g0905 427 ProSiteProfiles RecA family profile 1. 94 254 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aed4g0905 427 SUPERFAMILY RecA protein, C-terminal domain 326 378 IPR023400 -
Aed4g0905 427 ProSiteProfiles RecA family profile 2. 258 329 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0905 Aed-Chr4 8234131 8244658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0905 K03553 - gmx:100798983 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0905 4 8234131 8244658 Aed4g0905 4 8234131 8244658 ECH