Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0896 ATGGAGACTCCTCCGCAGCAACCAGGCGTGGTGGTGAAGAAGAAGGAAACAAGAGGCCGAAAACCCAAACCAAAGGAAGAGAAAGATCACGCGAAAGCGTTGAAGGAAGCCAGAAAAACACAGCAACAACAACAACAGTACCAACACCACCACCACCAACATCATCAGCAGCAGCAACAACAACCTTCAGTGGACGAGAAATACACACAATGGAAGTCCCTCGTCCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCCACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGGCAAAGCAACGCAACTTCACATTTTTTATTTTGAAAAAAAAATTGATTTTTTTTTTGTGTTGTTATTCGACTGATGGTAGCGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCAGAGCATATTTCGCAGTTTAATGAAGAGTCGCGGTCCCCATTTGTGAAGAAGTACAAGACTATCATTCATCCTGGCGAGGTCAACAGGATTAGGGAATTGCCGCAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCCGATGTTCTTGTTTGGGATGTTGAAAGTCAACCTAATCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGGCACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTATTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGACTCCAAATCTGGTGGGTCAATTATCAAATCAAACTCTAAGTCTGGAGAAGGCAACGATAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGCCATGAGGATACTGTTGAAGATGTGACTTTCTGCCCATCAAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATTTTATGGGATGCACGCGTTGGCTCTAGCCCCGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCATTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCTGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCAGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTGGTTGACTTCCATTGGAATGCATATGATCCATGGACAATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACATTGCAGATTTGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTGGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTTCAAAGACTGAAAAATGA 1620 0.4531 METPPQQPGVVVKKKETRGRKPKPKEEKDHAKALKEARKTQQQQQQYQHHHHQHHQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQAKQRNFTFFILKKKLIFFLCCYSTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEESRSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKSNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0896 539 Gene3D - 39 525 IPR015943 GO:0005515
Aed4g0896 539 SMART WD40_4 402 442 IPR001680 GO:0005515
Aed4g0896 539 SMART WD40_4 353 393 IPR001680 GO:0005515
Aed4g0896 539 SMART WD40_4 308 348 IPR001680 GO:0005515
Aed4g0896 539 SMART WD40_4 231 271 IPR001680 GO:0005515
Aed4g0896 539 SMART WD40_4 460 507 IPR001680 GO:0005515
Aed4g0896 539 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 357 IPR001680 GO:0005515
Aed4g0896 539 MobiDBLite consensus disorder prediction 281 309 - -
Aed4g0896 539 SUPERFAMILY WD40 repeat-like 175 530 IPR036322 GO:0005515
Aed4g0896 539 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 393 - -
Aed4g0896 539 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 393 IPR001680 GO:0005515
Aed4g0896 539 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 444 IPR001680 GO:0005515
Aed4g0896 539 MobiDBLite consensus disorder prediction 281 301 - -
Aed4g0896 539 MobiDBLite consensus disorder prediction 1 65 - -
Aed4g0896 539 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 66 153 IPR022052 -
Aed4g0896 539 Pfam WD domain, G-beta repeat 313 348 IPR001680 GO:0005515
Aed4g0896 539 Pfam WD domain, G-beta repeat 361 393 IPR001680 GO:0005515
Aed4g0896 539 Pfam WD domain, G-beta repeat 403 442 IPR001680 GO:0005515
Aed4g0896 539 Pfam WD domain, G-beta repeat 236 271 IPR001680 GO:0005515
Aed4g0896 539 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 444 - -
Aed4g0896 539 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 138 536 - -
Aed4g0896 539 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 37 118 - -
Aed4g0896 539 MobiDBLite consensus disorder prediction 20 37 - -
Aed4g0896 539 PANTHER WD40 REPEAT FAMILY 138 536 - -
Aed4g0896 539 PANTHER WD40 REPEAT FAMILY 37 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0896 Aed-Chr4 8135316 8142026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0896 317 502 Miscellaneous Gene Families AT5G08390 25.907 5.92e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0896 K10752 - gmx:100779302 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0896 4 8135316 8142026 Aed4g0896 4 8135316 8142026 ECH