Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0882 ATGATCAAAGGAAAAGACATATACGAAGTTCTGTCAGCAATAGTGCCTCTCTACTTGGCTATGTTCTTAGCATACGGCTCCGTCCGCTGGTGGAAGATCTTCACCCCGGAACAATGCTCCGGCATAAACCGCTTCGTCTCAGTTTTCTCAATACCCTTCCTCTCCTTCGATTTCATATCCAGCAACAATCCTTACACCATGAACTTCAGGTTCCTCGCCGCGGACTCGCTCCAAAAAGTCGTGGTCTTACTCGCGCTCTTCGTGTTTACGACCTTCACAAAATGGGGCAGCATGGACTGGTCCATCACGCTCTTCTCACTCGCCACCCTCCCCAACACGCTCGTCGTTGGGGCCCCACTTTTGACCGCCATGTACGGAAGTTTCACACACGACCTCATGGTACAGATCGTGGTCTTGCAGAGTGTGATTTGGTACACTCTTTTGTTGGTGTTGTTTGAATACAGAGGCGCAAAGCTTCTTATTTCAGAGCAATTCCCCGACACTGCGGGGAACATCGCTTCCCTTAGGGTTGATTCCAATGTTAGCTCTCTCAACAGTATAGACTCGCTCCATGCCGACACCGAGGTCGGAGAAAACGGTGAACTTCACGTGGTGGTCAGAAGCATGTCACGTTCTCGTCAACGACAAATTCATCGTCACGCTATGGTTTCTGATTTTGATTTTTCGTTCCGCAAATCGTATTCGACACCCAGAACGGCGAATCTTACTGGCGTTGAGATCTACCCAGTGCAGCAGCAGCAGCAAAGTGGTGGTTTTGATGATCATCAGAGTAGGTTTTGGAGGAGCAAGAGTGTCGGTGACGCGGTTTTTAACGACGGTTTTTCGTTTCCGTCTCTAAAACCAGTGTTTCACGGGTCTCGTAGTGTCGGTGACCAAAGAAACACAGTAGATCTTGAAGAAATTGTGGAAGGAGTTGAACATCCTGTAATGGGAAGAGACAAGGAGGCGAACATTGAAGAAGAAGGTGATGCAAACAAAAAGCAACAAATGCCACGTCTTAGTGTCATGATAAAGCTTATTCTCACAATGGTTTGGAGAAATCTCATAAGAAATCCTAATACTTGGGCGAGTGTTTTGGGTCTCGTTTGGTCTCTCATCTTTTTTAGGTGGAACATCGCAATGCCAAAAATTATAAAAAAGTCCATTGATATAATGTCTAATACAGGATTGGGAATGGCCATGTTCAGTCTAGGTTTATTCATGGCATTACAACCCAAGATCATCACTTGTGGAAAAACTCGTGCTGCAATTTCACTTGTAATTAGGTTCTTGGTTGGTCCAGCAGTGATTCTTGCAACCTCCAAAGCCATAGGTGTCCATGGAGTTCTTTTACATGTTACAATTGTTCAGGCTGCTCTTCCCCAAGGTATCGTTCCCTTTGTTTTCGCAAAAGAATATAATCTCCATGCAGATATACTTAGCACATCGTAA 1452 0.4559 MIKGKDIYEVLSAIVPLYLAMFLAYGSVRWWKIFTPEQCSGINRFVSVFSIPFLSFDFISSNNPYTMNFRFLAADSLQKVVVLLALFVFTTFTKWGSMDWSITLFSLATLPNTLVVGAPLLTAMYGSFTHDLMVQIVVLQSVIWYTLLLVLFEYRGAKLLISEQFPDTAGNIASLRVDSNVSSLNSIDSLHADTEVGENGELHVVVRSMSRSRQRQIHRHAMVSDFDFSFRKSYSTPRTANLTGVEIYPVQQQQQSGGFDDHQSRFWRSKSVGDAVFNDGFSFPSLKPVFHGSRSVGDQRNTVDLEEIVEGVEHPVMGRDKEANIEEEGDANKKQQMPRLSVMIKLILTMVWRNLIRNPNTWASVLGLVWSLIFFRWNIAMPKIIKKSIDIMSNTGLGMAMFSLGLFMALQPKIITCGKTRAAISLVIRFLVGPAVILATSKAIGVHGVLLHVTIVQAALPQGIVPFVFAKEYNLHADILSTS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0882 483 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 308 483 - -
Aed4g0882 483 TIGRFAM 2a69: auxin efflux carrier 1 483 IPR014024 -
Aed4g0882 483 Pfam Membrane transport protein 10 482 IPR004776 GO:0016021|GO:0055085
Aed4g0882 483 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 259 - -
Aed4g0882 483 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 259 IPR033526 GO:0010315|GO:0010329
Aed4g0882 483 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 308 483 IPR033526 GO:0010315|GO:0010329
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0882 Aed-Chr4 7990827 7994555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0882 1 482 Organic Solute Cotransporters AT1G77110 40.653 9.35e-116 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0882 K13947 - gmx:100788935 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0882 4 7990827 7994555 Aed4g0882 4 7990827 7994555 ECH
Aed6g2072 6 23383302 23386337 Aed4g0882 4 7990827 7994555 PCT