Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0879 ATGGACACAACAATGAATATGTACCAATTGCAACAGTTTCATATTCAACCCATGAAGAAGAAGAGGGAGAGAAGCAACAAACCCATGGAGAAAGATCAGAGGCTTCAAGTCATGGACTTCAGTGGCATGTCTTTGGAGTTTCTTCCCAAACCCACGCTTGATTTAGCTTCCATTTCCAAGTTGGACCTATCTAACAACAATCTCCAGGAAATTCCAGAATCATTAACGGCGAGACTGCTGAACGTGGAGGTGTTGGACGTGCGTTCGAACCAGCTCAAGTCTCTTCCAAATTCCATTGGCTGCCTCTCTAAGCTTAAGGTTTTGAATGTCTCAGGCAACTTCCTCGAATTCCTCCCCAAAACCATTGAGAATTGCAGAGCATTAGAAGAACTGAATGCAAACTTCAACAAGCTGAGCAAGCTGCCAGACACAATAGGGTTCGAGCTCATTAACCTAAAGAAGCTCTCAGTGAACTCCAACAAGCTCGTGTTTCTTCCAAGCACCACTTCACACTTAACATCTTTGAAAGTTCTAGACGCACGCTTGAATTGCCTAAGGGCACTCCCTGAGGATCTTGAGAATCTCATTAACCTTGAAACCCTAAACGTGAGTCAAAACTTCCAATACTTGGAGACCCTCCCTTACTCCATAGGGCTCCTCTTGTCACTCATTGAACTTGATGTTAGCTACAACAGCATCAAGACCTTGCCTGAGTCCATTGGGTGCCTCAAGAATCTCCAGAAGCTGAGTGTTGAAGGGAACCCTCTCACTTCTCCCCCTATGGAGGTGGTGGAGCAGGGACTTCATGTGGTGATGGAGTTCATGCATCATAAGATGAACTCAAGTGATGGAAACAAAACTAATAAGAAGAGGTGGTGGATGGGGAAGATTGTGAAATGTGGAACCTTCAATAAAGGTGGGAAACGACCTGAGCATGTGGGTTACAACATGCTTAAGCAACAGAATATCAATGGTCTTGCTTCCCCAGGCTTCATGGGGATGCTCTCGCCTCTTCGCCTCTTCTCTCCCCGTAATTCGCCCCGTCGTTCCTTCAGTTGA 1059 0.458 MDTTMNMYQLQQFHIQPMKKKRERSNKPMEKDQRLQVMDFSGMSLEFLPKPTLDLASISKLDLSNNNLQEIPESLTARLLNVEVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNFLEFLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLSVNSNKLVFLPSTTSHLTSLKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLIELDVSYNSIKTLPESIGCLKNLQKLSVEGNPLTSPPMEVVEQGLHVVMEFMHHKMNSSDGNKTNKKRWWMGKIVKCGTFNKGGKRPEHVGYNMLKQQNINGLASPGFMGMLSPLRLFSPRNSPRRSFS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0879 352 Pfam Leucine rich repeat 58 113 IPR001611 GO:0005515
Aed4g0879 352 Pfam Leucine rich repeat 220 256 IPR001611 GO:0005515
Aed4g0879 352 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 343 - -
Aed4g0879 352 Gene3D Ribonuclease Inhibitor 143 277 IPR032675 -
Aed4g0879 352 Gene3D Ribonuclease Inhibitor 2 142 IPR032675 -
Aed4g0879 352 ProSiteProfiles Leucine-rich repeat profile. 222 243 IPR001611 GO:0005515
Aed4g0879 352 SMART LRR_bac_2 125 144 - -
Aed4g0879 352 SMART LRR_bac_2 172 191 - -
Aed4g0879 352 SMART LRR_bac_2 102 121 - -
Aed4g0879 352 SMART LRR_bac_2 243 262 - -
Aed4g0879 352 SMART LRR_bac_2 55 74 - -
Aed4g0879 352 SMART LRR_bac_2 195 216 - -
Aed4g0879 352 SMART LRR_bac_2 149 168 - -
Aed4g0879 352 SMART LRR_bac_2 79 98 - -
Aed4g0879 352 SMART LRR_bac_2 220 239 - -
Aed4g0879 352 ProSiteProfiles Leucine-rich repeat profile. 81 102 IPR001611 GO:0005515
Aed4g0879 352 SMART LRR_typ_2 79 101 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 149 171 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 126 148 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 243 267 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 102 125 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 220 242 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 55 78 IPR003591 -
Aed4g0879 352 SMART LRR_typ_2 172 195 IPR003591 -
Aed4g0879 352 ProSiteProfiles Leucine-rich repeat profile. 57 78 IPR001611 GO:0005515
Aed4g0879 352 PANTHER LEUCINE-RICH REPEAT-CONTAINING 5 343 - -
Aed4g0879 352 SUPERFAMILY L domain-like 29 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0879 Aed-Chr4 7978940 7982667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0879 22 302 Receptor kinase-like Gene Family AT5G46330 26.280 1.54e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0879 - - gmx:100775711 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0879 4 7978940 7982667 Aed4g0879 4 7978940 7982667 ECH