Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0848 ATGTTGTTCCACCCAACAAGACCCTTGTCCCTCCAAACCTCACTCAAGCGTGGCTTCTTCACCCCTACTCCAAAACGCATCAACCAGTTCCTCCTCTTCCTCTTCCGCCACCAGAAGTTCAACCTAATCACCCACTTCTTCTCGCAGCTGAAATCCAACAACGCCCCCACCAACCACACAACCCTCTCTCTCCTCACATGGGCACTCCTAAAATCGAAAAAGTTCGAAGAAGCAGAGCAAATCATGCACACCAACACCCACATCACGCAATCCTCCATGTGGGACTTTCTCATCCAAAATTTCCACGACCAACCGGAGAAAGCTCTCTCATTTTTGCAGCGTTGCGTGAGAAACCGTGGTGTCTTGCCTTCTTCTGCCACTTTTTGTTTGGTAGTTCACAAATTGAGCTCGAAGGGGTTGATGGGTAGGGCTATTGAGGCGCTGGAGCTGATGGCTGAGGATGGAGTTAGGTACCCTTTTGATGATTTCGTGTGTAGCTCTGTGATTTCCGGGTTTTGTAGGATTGGGAAACCGGAACTTGGGTTGGGGTTTTTTAAGAATGTTACGGATTGTGGCGGGTTGAGGCCAAATGTGGTGACTTGCACTGCTCTTGTGGGGGCTCTTTGCAAGATGGGGAGGGTTGGGGAAGTGTGTGCTTTGGTGCAGTGGATGGAGAGGGAAGGGTTGGGTTTGGATGTTGTTTTGTATAGTGCTTGGGCTTGTGGGTATGTTGAGGAGAGGGTTTTGGGGGAGGTTTTTCGGAGGATGAGGGAGATGGTGGAGAAGGGTATAGGTCATGATTTTGTTAGCTATACTGTGCTTGTGGATGGGTTTTCCAAGCTAGGTGATGTGGAGAAGTCGTTTACTTTCTTGGCCAAGATGATAAAAGAAGGGCATAGACCTAATAGGGTTACATATAGTGCAATCATGTCTGCTTATTGTAAGAAGGGTAAGGTGGAGGAGGCATTTGGTGTTTTTGAGAGCATGAAGGATTTGGGAATTGAGCTGGATGAGTATGTGTTTGTGATTTTGATCGATGGGTTTGGGAGGAGAGGGGATTTTGATAAGGTGTTTTGTCTGTTTGATGAAATGGAGAGGAGTGGGATTAGTCCTAGTGTTGTTGCATACAATGCTGTCATGAATGGTTTATCGAAGCACAGGAGGACATCTGAGGCGGATGAGCTGTTGAAAAATGTCGCTGCTGATGTGATTACGTATAGCACTTTGCTGCATGGATATACAGAGGAGGAGAACGTTCTGGGGATTTTGCAAACGAAGAGGCGACTGGAAGAATCTGGAATTGCCATGGATGTTGTGATGTGTAATGTGCTGATCAAAGCCCTGTTTATGATGGGGGCTTTTGAAGATGTTTATGCACTTTACAAAGGGATGTCTGAAATGGATTTGGTTCCAAATTCGGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAGAATTGATGAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTCAATCTCATCACTTGCGTGCTACAATAGTATTATTAATGGCCTTTGCAAGAATGGTATGACAGAAATGGCCATTGAGGCATTACTTGAACTCAATCATGAAGGTCTTGAGTTGGATATAGGTTCATTTAGGATGTTAATGAAGACAATTTTCAAAGAAAACAATACAAAAGAGGCTTTAGATTTAGTTTACAGAATGGAAGGTTTGGGACTAGACATATATAGTGCAGTATGTAATGATTCCATCTTTTTATTATGTCAAAGAGGATTACTTGATGATGCAAATCATATGTGCATGATGATGAAAAAGAAAGGCCTATCTGTTACATGCAATTCTTATTATTCCATTTTGAGAGGGCATCTTAGTAATGGGAATCGGGAGCAAATTTTGCCCCTTTTGAATAGCTTCCTGAAAGAATATGGTCTAGCTGAACCAACGGTACAAAAGATACTTGCATGCTACCTCTGTCTAAAAGATGTCAATAGTGCCCTTCGATTTCTTGGAAAAACAATGGATAATTCTTCAGCAGTCACTTTTCTTGCCTCCATTCTCAAGATTCTCATAAAGGAGGGTAGAGCATTAGATGCATATAGGCTTGTCATGGAGACTCAAGATAATTTACCAGTCATGTATGCTGATTATGCCCTTGTGATTGATAGCCTGTGCAAGGGAGGATATCTCAATAAAGCATTGGATCTCTGTGCCTTTGTTGAAAAGAAGGGGATGGATTTGAACATAGTCATATATAATTCGATAATCAATGGATTGTGCCACGAGGGACGTCTTATTGAAGCATTTCGGCTATTGGATTCATTAGAGAAACTTAATTTGATACCCTCTGAAATAACTTATGCTACAGTTATTTATGCTTTATGTAGGGAGGGATTTTTGTCAGATGCAGAGCATGTTTTTAGGAAAATGGTGCTCAAGGGCTTTCAGCCAAAAGTACAAGTTTACAATTCATTACTTGATGGAATTTCGAAGTTTGGTCAACTAGAAAAGACATCTGAGCTTCTAAATGATATGGAGACAAAATATATTGAGCCTGACAGTCTGACGATTAGTGCTGTAATTAATTGTTATTGCCAAAAGGGCGACATGCACGGAGCTCTTGAATTCCATTATAAGTTCAAGCAGAAGGATATGTCGCCTGATTTTTTTGGGTTCTTGTATTTGATAAGGGGTCTATGTACCAAGGGAAGGATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAGTCCAAGAATGTGGCGGAGTTAATTAACATAGTCAACAAGGAGGTTGATACTGAATCAATAAGTGATTTACTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCATATATACTTTTTCCTGTTCAAAGGTTGTCCACCTATCAAGGATTCCATAATCAGCAGAAGAGTTATGAATGGAAGGATTTTGGTTCAAAATCTTCAAGCATTCTACCTTCCTCTTGCAAAAGTGATTTGGATCTTGGATCTTGTGATGACAAAGATGTTAGGAATCTTACAACAAATAATGGTGGTTATATGACAAGATTCCAGCTGCATGGCTTTGATTTCTATTATTCTAGAATTGCTGCACTTTGTGCCAAAGGGGAACTGCAGAAAGCAAATCAATCAGCAAAAGAATTTCTTTCTGACCTGACGGAGTCTATGAACTGA 3204 0.4157 MLFHPTRPLSLQTSLKRGFFTPTPKRINQFLLFLFRHQKFNLITHFFSQLKSNNAPTNHTTLSLLTWALLKSKKFEEAEQIMHTNTHITQSSMWDFLIQNFHDQPEKALSFLQRCVRNRGVLPSSATFCLVVHKLSSKGLMGRAIEALELMAEDGVRYPFDDFVCSSVISGFCRIGKPELGLGFFKNVTDCGGLRPNVVTCTALVGALCKMGRVGEVCALVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFRRMREMVEKGIGHDFVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNRVTYSAIMSAYCKKGKVEEAFGVFESMKDLGIELDEYVFVILIDGFGRRGDFDKVFCLFDEMERSGISPSVVAYNAVMNGLSKHRRTSEADELLKNVAADVITYSTLLHGYTEEENVLGILQTKRRLEESGIAMDVVMCNVLIKALFMMGAFEDVYALYKGMSEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDEFRKTSISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGSFRMLMKTIFKENNTKEALDLVYRMEGLGLDIYSAVCNDSIFLLCQRGLLDDANHMCMMMKKKGLSVTCNSYYSILRGHLSNGNREQILPLLNSFLKEYGLAEPTVQKILACYLCLKDVNSALRFLGKTMDNSSAVTFLASILKILIKEGRALDAYRLVMETQDNLPVMYADYALVIDSLCKGGYLNKALDLCAFVEKKGMDLNIVIYNSIINGLCHEGRLIEAFRLLDSLEKLNLIPSEITYATVIYALCREGFLSDAEHVFRKMVLKGFQPKVQVYNSLLDGISKFGQLEKTSELLNDMETKYIEPDSLTISAVINCYCQKGDMHGALEFHYKFKQKDMSPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNVAELINIVNKEVDTESISDLLATLCEQGRVQEAVTVLNEIAYILFPVQRLSTYQGFHNQQKSYEWKDFGSKSSSILPSSCKSDLDLGSCDDKDVRNLTTNNGGYMTRFQLHGFDFYYSRIAALCAKGELQKANQSAKEFLSDLTESMN 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 509 537 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 164 188 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 199 228 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 269 298 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 509 541 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 784 816 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 749 782 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 374 397 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 474 504 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 855 887 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Aed4g0848 1067 TIGRFAM PPR: pentatricopeptide repeat domain 894 918 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 468 498 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat 883 914 IPR002885 -
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 707 833 IPR011990 GO:0005515
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 99 209 IPR011990 GO:0005515
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 553 706 IPR011990 GO:0005515
Aed4g0848 1067 PANTHER ATPASE EXPRESSION PROTEIN 3 536 668 - -
Aed4g0848 1067 PANTHER ATPASE EXPRESSION PROTEIN 3 47 536 - -
Aed4g0848 1067 PANTHER ATPASE EXPRESSION PROTEIN 3 740 1064 - -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 782 816 IPR002885 -
Aed4g0848 1067 PANTHER ATPASE EXPRESSION PROTEIN 3 683 744 - -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 852 886 IPR002885 -
Aed4g0848 1067 Pfam Pentatricopeptide repeat domain 397 447 IPR002885 -
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 834 1001 IPR011990 GO:0005515
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 400 537 IPR011990 GO:0005515
Aed4g0848 1067 Gene3D Tetratricopeptide repeat domain 242 399 IPR011990 GO:0005515
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 781 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat family 816 865 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat family 747 795 IPR002885 -
Aed4g0848 1067 Pfam PPR repeat family 301 348 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 887 921 IPR002885 -
Aed4g0848 1067 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 817 851 IPR002885 -
Aed4g0848 1067 PANTHER FERTILITY RESTORER-LIKE 536 668 - -
Aed4g0848 1067 PANTHER FERTILITY RESTORER-LIKE 683 744 - -
Aed4g0848 1067 PANTHER FERTILITY RESTORER-LIKE 47 536 - -
Aed4g0848 1067 PANTHER FERTILITY RESTORER-LIKE 740 1064 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0848 670 958 Glycosyltransferase AT1G05670 29.618 3.47e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0848 - K17964 gmx:100783405 1931.76