Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0790 ATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAAATAACTCTTGGCAAAGACATCAATGGAAGACACCTCTTCTCATATCATAGGATTTCAGCACTGAGTAAGTTATCGAAGACAATATGCATAAAGGCATCCTTGGATCAAAGAAAGCATGAAGGAAGAAGAGGATTTCTAAAGTTGTTGAATGTGGGAGTTGGCTTACCTGTATTATTAGAAGGTGGGAAAGCTTATGCTGATGAACAAGGAGTTTCCTCCTCTAGACTGTCTTATTCTAGATTTCTTGAGTATTTGGATAAGGGTAGAGTTAAAAAAGTGGATCTGTTTGAAAATGGAACCTCGGCTGTTGTGGAGACTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTGCGAGTTCAACTTCCTGGTCTTAGCCAAGAGCTCCTTCAGAAGTTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGGCCAAGAAGAGTCAGGTTCTCCATTAGCTAACCTGATTGGGAACCTGGCTTTCCCTATGATTTTAATTGGAGGATTGTTCCTTCTCTCAAGACGATCCTCAGGAGGGATGGGAGGTCCTGGTGGGGGCTTTCCTCTTGCTTTTGGTCAGTCTAAAGCCAAGTTTCAAATGGAGCCTAATACTGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTAGTGGAATTTCTGAAGAAGCCTGAGAGGTTCACTGCTATTGGGGCTCGCATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCCGGAACTGGGAAGACACTTTTGGCAAAGGCTATTGCAGGTGAAGCAGCCGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTATTCAGGAAGGCCAAAGAGAATGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGACAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACTCTCAATCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGACCAGGACGATTTGATAGACAGGTAACAGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGATAATTGCTATGAGAACACCTGGTTTTAGTGGAGCAGATCTGGCCAACCTGCTGAATGAAGCTGCTATATTAGCTGGTCGTCGGGGAAAGACAGCAATTTCTTCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTGATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGGTATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAGGTAACCTTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAATTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAGATAACCAGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACACATCAGCTCAAAGTGATGTCATAATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTCAAAAGGATCTCAGATGAAGCATATGAAATTGCATTGAGCCAAATAAGGAACAACCGCGAGGCAATTGACAAGATTGTGGAAGTTCTACTGGAGAAGGAGACGGTGAGTGGGGATGAATTCCGAGCTATCCTGTCTGAATTTGTTGAAATTCCTGCTCAAAATCGGGTCTCTCCTTCAACTCCCTCACCAGTTGCAGTTTGA 2073 0.4313 MAAPLACLVGSGLSIQSNKITLGKDINGRHLFSYHRISALSKLSKTICIKASLDQRKHEGRRGFLKLLNVGVGLPVLLEGGKAYADEQGVSSSRLSYSRFLEYLDKGRVKKVDLFENGTSAVVETVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNGQEESGSPLANLIGNLAFPMILIGGLFLLSRRSSGGMGGPGGGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAAVPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRVDILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEIIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHGICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEIIFGESEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDTSAQSDVIMRMMARNSMSEKLAEDIDAAVKRISDEAYEIALSQIRNNREAIDKIVEVLLEKETVSGDEFRAILSEFVEIPAQNRVSPSTPSPVAV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0790 690 Pfam AAA+ lid domain 420 463 IPR041569 -
Aed4g0790 690 CDD AAA 240 397 - -
Aed4g0790 690 Gene3D - 216 398 IPR027417 -
Aed4g0790 690 SUPERFAMILY FtsH protease domain-like 480 674 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed4g0790 690 Gene3D - 399 474 - -
Aed4g0790 690 PANTHER METALLOPROTEASE M41 FTSH 4 680 - -
Aed4g0790 690 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 19 679 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed4g0790 690 Pfam ATPase family associated with various cellular activities (AAA) 265 396 IPR003959 GO:0005524|GO:0016887
Aed4g0790 690 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 668 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed4g0790 690 Gene3D Peptidase M41 475 673 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed4g0790 690 Pfam Peptidase family M41 479 667 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed4g0790 690 Gene3D - 90 168 - -
Aed4g0790 690 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Aed4g0790 690 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 680 - -
Aed4g0790 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 468 IPR027417 -
Aed4g0790 690 SMART AAA_5 261 400 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0790 Aed-Chr4 6612849 6616735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0790 219 668 Miscellaneous Gene Families AT5G53170 50.331 5.57e-137 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0790 K03798 - gmx:100795567 1231.08