Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0774 ATGACAAGAGAAACTTTAGCTTGGTCCTTGCTTCTGGGGATCGCTTGTTCTTGTTCCATAGTTATTGGTTCATATGAGGAGATTTTGCCTCCTAGGATGACAATTTCTAGTGACAACTATCATGAAGCAATACAAAGATTGCAGTCATTTAAGGCCTCTCTAACTAGACATGATAACATTGCTCCAGCACCATTTTCTTTCTTATCACCCTTCTCAAATCCAACGGGTAATTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGAGGATGCAGCCAAGGGTCCTAGTGAAGGCTATTTGATGGAAGGAATCAGAGACCTTGGTGGTGCTCAGGTTAATCTCGAGGCTGGAAATTACTTGATCAACCGGTCACTGCGGTTGCCGGTGGCCGGGGTGGGGAACCTTATGATACATGGGGGGACTATAAGAGCCTCAGATGATTTTCCAGCAGATGGCTATATCATTGATTTGTCACCTCCTTCTAATGGAGGAAACAGTTTACCATCCTACAATTTTGAGTTCATAACTCTCAAGGACCTATTGCTGGACTCAAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTTAGGACTAACATAGATAACTGTTACATCACACATTTCACTACCAATGGGATTTTAGTTCAAAGTGGCCATGAAACCTATATCAGGAACTCTTTCCTTGGCCAGCATATAACTGCTGGTGGTGACAAAAATGAGAGGGACTTCTCAGGCAATGGAATAACCCTGCAGGGTAATGACAATGCTGTCACTGATGTTGTAATTTTCTCTGCTGAAATAGGAATAATGGTTACTGGTCAGGCCAATGCTTTTTCTGGTGTGCATTGTTACAATAAGGCCACTGGCTTTGGAGGCACTGGAATTTATTTGAAACTACCAGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACTAGTATTGTGGCAGAAGACCCGGTTCAACTCCATATCTCTAGCAGTTTCTTCCTTGGTGATGCCAATATTGTCCTAAAGTCCAAGAATGGAATTGTGAATGGTGTTGATATTGTTGATAACATGTTCTCAGGCTCAAATCAAGGGGTTGAAATTGTTCAGCTTGACCAAGCAAATAGTCCTTTCCAACAAATTGATCAAGTTATTGTTGATAGAAACATTGCAAGGGGGATGAAGTTGAAGGCCACAGTTGCAAAAATGTCAATGCAAGGGAATGGAACCTCTTGGAGTGTTGATTTTAACAGTGTTTTGCTTTTTCCTAACCTTATAAAGAATATTCAGTACTCTTTAAGCTCCACAGGCAGCACTTTCCCCAATCATGCTCTGAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAATGAAGCTGTAGCTGCCAATGTTTTTGTTACGGTGGATCAAAGTGCATTAAGTTGA 1425 0.4168 MTRETLAWSLLLGIACSCSIVIGSYEEILPPRMTISSDNYHEAIQRLQSFKASLTRHDNIAPAPFSFLSPFSNPTGNSDSTEALLAAIEDAAKGPSEGYLMEGIRDLGGAQVNLEAGNYLINRSLRLPVAGVGNLMIHGGTIRASDDFPADGYIIDLSPPSNGGNSLPSYNFEFITLKDLLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERDFSGNGITLQGNDNAVTDVVIFSAEIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSKNGIVNGVDIVDNMFSGSNQGVEIVQLDQANSPFQQIDQVIVDRNIARGMKLKATVAKMSMQGNGTSWSVDFNSVLLFPNLIKNIQYSLSSTGSTFPNHALRNVSENRVVIETNEAVAANVFVTVDQSALS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0774 474 SUPERFAMILY Pectin lyase-like 71 428 IPR011050 -
Aed4g0774 474 Gene3D - 73 473 IPR012334 -
Aed4g0774 474 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Aed4g0774 474 PANTHER POLYGALACTURONASE QRT3 5 68 IPR039279 GO:0004650
Aed4g0774 474 PANTHER POLYGALACTURONASE QRT3 72 472 IPR039279 GO:0004650
Aed4g0774 474 SMART pbh1 348 369 IPR006626 -
Aed4g0774 474 SMART pbh1 196 218 IPR006626 -
Aed4g0774 474 SMART pbh1 132 157 IPR006626 -
Aed4g0774 474 SMART pbh1 253 274 IPR006626 -
Aed4g0774 474 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 5 68 - -
Aed4g0774 474 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 72 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0774 Aed-Chr4 6474383 6477241 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0774 - - gmx:100804107 838.565