Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0770 ATGACAAGAGAAACTTTAGCTTGGTCCTTGCTTCTGGGGATCGCTTGTTCTTGTTCCATAGTTATTGGTTCATATGAGGAGATTTTGCCTCCTAGGATGACAATTTCTAGTGACAACTATCATGAAGCAATACAAAGATTGCAGTCATTTAAGGCCTCTCTAACTAGACATGATAACATTGCTCCAGCACCATTTTCTTTCTTATCACCCTTCTCAAGTCCTTCTCCTGCTCCTGCTCCTTCTCATCTCTCACGTCAGGGTGTGAACAATCAACGGGTGTACCGTGTGACATCTTATGGTGCAGATCCAACGGGTAATTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGAGGATGCAGCCAAGGGTCCTAGTGAAGGCTATTTGATGGAAGGAATCAGAGACCTTGGTGGTGCTCAGGTTAATCTCGAGGGTGGAAATTACTTGATCAACCAGTCACTGCAGTTGCCGGTGGCCGGGGTGGGGAACCTTATGATACATGGGGGGACTTTAAGAGCCTCAGATGATTTTCCAGCAGATGGCTATATCATTGATTTGTCACCTCCTTCTAATGGAGGAAACAGTTTACCATCCTACAATTTTGAGTTCATAACTCTCAAGGACCTATTGCTGGACTCAAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTTAGGACTAACATAGATAACTGTTACATCACACATTTCACTACCAATGGGATTTTAGTTCAAAGTGGCCATGAAACCTATATCAGGAACTCTTTCCTTGGCCAGCATATAACTGCTGGTGGTGACAAAAATGAGAGGGACTTCTCAGGCACTGGAATAACCCTGCAGGGTAATGACAATGCTGTCACTGATGTTGTAATTTTCTCTGCTGAAATAGGAATAATGGTTACTGGTCAGGCCAATGCTTTTTCTGGTGTGCATTGTTACAATAAGGCCACTGGCTTTGGAGGCACTGGAATTTATTTGAAACTACCAGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACTAGTATTGTGGCAGAAGACCCGGTTCAACTCCATATCTCCAGCAGTTTCTTCCTTGGTGATGCCAATATTGTCCTAAAGTCCAAGAATGGAATTGTGAATGGTGTTGATATTGTTGATAACATGTTCTCAGGCTCAAATCAAGGGGTTGAAATTGTTCAGCTTGACCAAGCAAATAGTCCTTTCCAACAAATTGATCAAGTTATTGTTGATAGAAACATTGCAAGGGGGATGAAGTTGAAGGCCACAGTTGCAAAAATGTCAATGCAAGGGAATGGAACCTCTTGGAGTGTTGATTTTAACAGTGTTTTGCTTTTTCCTAACCTTATAAAGAATATTCAGTACTCTTTAAGCTCCACAGGCAGCACTTTCCCCAATCATGCTCTGAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAATGAAGCTGTAGCTGCCAATGTTTTTGTTACGGTGGATCAAAGTGCATTAAGTTGA 1512 0.4233 MTRETLAWSLLLGIACSCSIVIGSYEEILPPRMTISSDNYHEAIQRLQSFKASLTRHDNIAPAPFSFLSPFSSPSPAPAPSHLSRQGVNNQRVYRVTSYGADPTGNSDSTEALLAAIEDAAKGPSEGYLMEGIRDLGGAQVNLEGGNYLINQSLQLPVAGVGNLMIHGGTLRASDDFPADGYIIDLSPPSNGGNSLPSYNFEFITLKDLLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERDFSGTGITLQGNDNAVTDVVIFSAEIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSKNGIVNGVDIVDNMFSGSNQGVEIVQLDQANSPFQQIDQVIVDRNIARGMKLKATVAKMSMQGNGTSWSVDFNSVLLFPNLIKNIQYSLSSTGSTFPNHALRNVSENRVVIETNEAVAANVFVTVDQSALS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0770 503 SUPERFAMILY Pectin lyase-like 92 462 IPR011050 -
Aed4g0770 503 PANTHER POLYGALACTURONASE QRT3 5 501 IPR039279 GO:0004650
Aed4g0770 503 SMART pbh1 225 247 IPR006626 -
Aed4g0770 503 SMART pbh1 377 398 IPR006626 -
Aed4g0770 503 SMART pbh1 282 303 IPR006626 -
Aed4g0770 503 SMART pbh1 161 186 IPR006626 -
Aed4g0770 503 Pfam Pectate lyase superfamily protein 96 319 IPR024535 -
Aed4g0770 503 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 5 501 - -
Aed4g0770 503 Gene3D - 94 502 IPR012334 -
Aed4g0770 503 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0770 Aed-Chr4 6424487 6427416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0770 - - gmx:100804107 882.863