Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0758 ATGAAACAGTTGGTGGCTTCGGCCCTGTTGTTGTTGGTGGTGCTTGTTGTTGATGCCAGGTTTGTGGTGGAGAAGAGCAGTATAGCTGTTCTGTCCCCGCACAAGCTGAGGGGCAAACACGATGGTGCCATCGGAAACTTTGGCCTTCCGGACTACGGAGGATTCATCGTCGGCTCCGTCGTGTATCCCGCCAAAGGCTCCCATGGTTGTCAAGTCTTTGATGGTGAGAAGCCCTTCAAGTTCCAGTCAAATCGTCCCACTATTGTTCTCCTTGATCGTGGCGAGTGTTACTTTGCTTTGAAGGTTTGGCATGCCCAACTGGCTGGTGCTGCAGCAGTTTTGGTGACTGATAGCATTGATGAGTCTCTAATAACCATGGATTCTCCTGAGGAGAGCTCTGATGCAGATGGCTACATAGAGAAGATCACAATTCCATCAGCTCTGATAGATAAAACCTTCGGCGATACATTGAAAGAAGCTTTGAATAACAAAGATGAAGTTTTGCTAAGAATTGATTGGAGAGAGTCAGTGCCTCACCCTGACAGCAGGGTTGAGTATGAACTTTGGACCAACAGCAATGATGAGTGTGGAGCTCGTTGCGACGAACAGATGAATTTCGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGAGGGGTGGCTACACCTTGTTCACTCCACACTACATAACTTGGTTTTGTCCACCACCCTTCATTCTTAGCAGCCAGTGCAAGTCTCAGTGTATAAACCATGGTAGGTATTGTGCTCCGGATCCGGAGAAGGATTTTGGAGAGGGATATGAAGGGAAGGATGTGGTGTATGAAAACTTGAGGCAGCTCTGTGTCCATAGAGTTGCCAATGAGAGCAACCGTTCATGGGTCTGGTGGGATTATGTCACAGATTTCCATGTCAGATATCTGCCTATGGATAAAATTAAGAAATGCATGGGTGATCCTGAAGCAGATGTGGAGAATGAAGTGCTAAAGAATGAGCAACAAGTCCAGAGAACTGCTATACTGAAGGCTGTATGTTCTGGATTTAAGGAGACTACTGAACCTTCAGTTTGTTTAAGTGGAGAAGTTGAGACTAATGAGTGTCTTGAAAGAAATGGAGGATGTTGGCAAGACAGACATTCTAACATAACTGCTTGCAAGTATAAGGGTGATGGTTACACAACATGTGAAGCTTTTGGACCTGCAAGGTGTTCTATAAACAATGGTGATATTGATGAATGTAAGGATCGAAGTGCTTGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCAGTTATGATTGTAAATGCAAGGGAAATCTTCTATACATAAAGGAACAAGATGTTTGTATTGAAAGAAGTGGATCAAAATTTGGAAGGTTCCTTGCCTTTACGGTCATAGCAGTTGTTGTTGGTGCTGGTCTTGCTGGTTATGTTTTCTACAAATATAGACTTCGGTCTTACATGGACTCTGAGATCATGGCTATCATGTCACAATACATGCCATTGGACCAGCAAAACAATGTAGTTCATGCTGAAGCTCAGCCTTTACGACAACAAGGCACCGTATAA 1569 0.4455 MKQLVASALLLLVVLVVDARFVVEKSSIAVLSPHKLRGKHDGAIGNFGLPDYGGFIVGSVVYPAKGSHGCQVFDGEKPFKFQSNRPTIVLLDRGECYFALKVWHAQLAGAAAVLVTDSIDESLITMDSPEESSDADGYIEKITIPSALIDKTFGDTLKEALNNKDEVLLRIDWRESVPHPDSRVEYELWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPPPFILSSQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRYLPMDKIKKCMGDPEADVENEVLKNEQQVQRTAILKAVCSGFKETTEPSVCLSGEVETNECLERNGGCWQDRHSNITACKYKGDGYTTCEAFGPARCSINNGDIDECKDRSACQCDGCSCKNTWGSYDCKCKGNLLYIKEQDVCIERSGSKFGRFLAFTVIAVVVGAGLAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQQGTV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0758 522 SMART egfca_6 408 450 IPR001881 GO:0005509
Aed4g0758 522 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 403 498 - -
Aed4g0758 522 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 313 - -
Aed4g0758 522 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 320 395 - -
Aed4g0758 522 CDD EGF_CA 408 437 - -
Aed4g0758 522 Pfam PA domain 58 157 IPR003137 -
Aed4g0758 522 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 403 498 - -
Aed4g0758 522 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 10 313 - -
Aed4g0758 522 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 320 395 - -
Aed4g0758 522 Gene3D Laminin 407 451 - -
Aed4g0758 522 SUPERFAMILY PA domain 87 122 IPR046450 -
Aed4g0758 522 Gene3D - 18 180 - -
Aed4g0758 522 ProSitePatterns Calcium-binding EGF-like domain signature. 408 434 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0758 Aed-Chr4 6317071 6322791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0758 8 519 Miscellaneous Gene Families AT1G30900 58.442 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0758 - - gmx:100790467 963.755