Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0705 ATGGAGGTGGAGCCCGTGGAGCCACAGTCGCTGAAGAAGCTTAGCTTCAAGTCTCTGAAGCGCGCTCTCGATCTCTTCTCTCCTATCCACGGACACCTCGCTCCTCCCGATGCCGAAAGTGTGGAGTATGGTGGAATCAAAAGCACTGATCAACCACCTCGTCAAGTTAGTTCTGCCACACAGGATCGTACTCAACAAGCAGGGCCCTCTAACATTCTTGCTCTTCCAGGTCCCGGGGATTCCAAGGATTCTCAGAAAGGAGGACCCCAAAAGGCCTTGGTTGTTGGTCCAGCTATGCCATCCACAACACCGAATGATACTGGCTTTCAGGGCAAAAGTACAGCAATTATTTCTGCCTCTGGTTCATCTGAAAGAAATTTATCAACATCTGCTTTGATGGAAAGAATGCCAAGTAAATGGCCACGTCCTGTGTGGCATGCTCCATGGAAGAACTACAGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCAATTGATCCCAGTAACACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGAGTATTAAAGCTCACATTAACAGGTCACATTGAACAAGTTAGAGGCCTTGCTGTTAGCAACAGACATACTTACATGTTCTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCATATCATGGTCATCTGAGTGGTGTTTATTGCTTGGCTCTTCATCCCACAATTGATGTTTTACTAACTGGAGGACGCGATTCTGTCTGCCGGGTTTGGGATATACGTAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGATAACACCGTCTGCTCTGTGTTTACACGGCCAACGGATCCCCAAGTTGTGACAGGTTCTCATGACACTACCATTAAGATGTGGGACCTAAGATATGGTAAAACAATGTCAACTCTTACAAACCATAAAAAATCTGTTCGAGCAATGGCCCAGCATCCCAAAGAGCAAGCTTTTGCATCAGCATCGGCTGACAATATTAAAAAGTTCAACCTTCCAAAAGGAGAATTTTTGCACAATATGCTTTCTCAACAGAAAACTATCATCAATGCAATGGCTGTCAATGAGGAGGGTGTGATGGTTACTGGAGGTGACAACGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAATCCCAAACAATTGTACAGCCTGGTTCACTGGACAGTGAAGCTGGTATTTATGCTAGTACTTTTGATTTGACTGGTTCGAGGCTTATAACCTGTGAAGCTGACAAGACAATAAAAATGTGGAAAGAAGATGAATCTGCCACTCCTGAAACCCATCCTCTTAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1410 0.4482 MEVEPVEPQSLKKLSFKSLKRALDLFSPIHGHLAPPDAESVEYGGIKSTDQPPRQVSSATQDRTQQAGPSNILALPGPGDSKDSQKGGPQKALVVGPAMPSTTPNDTGFQGKSTAIISASGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAIDPSNTWFCTGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKMWDLRYGKTMSTLTNHKKSVRAMAQHPKEQAFASASADNIKKFNLPKGEFLHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYASTFDLTGSRLITCEADKTIKMWKEDESATPETHPLNFRPPKDIRRF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0705 469 CDD WD40 151 446 - -
Aed4g0705 469 MobiDBLite consensus disorder prediction 29 112 - -
Aed4g0705 469 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 5 469 IPR045241 GO:0000398
Aed4g0705 469 ProSitePatterns Trp-Asp (WD) repeats signature. 300 314 IPR019775 -
Aed4g0705 469 PANTHER BNAA01G27690D PROTEIN 5 469 - -
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 274 - -
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 238 IPR001680 GO:0005515
Aed4g0705 469 MobiDBLite consensus disorder prediction 447 469 - -
Aed4g0705 469 PRINTS G protein beta WD-40 repeat signature 300 314 IPR020472 -
Aed4g0705 469 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Aed4g0705 469 PRINTS G protein beta WD-40 repeat signature 174 188 IPR020472 -
Aed4g0705 469 MobiDBLite consensus disorder prediction 50 71 - -
Aed4g0705 469 ProSitePatterns Trp-Asp (WD) repeats signature. 258 272 IPR019775 -
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 190 229 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 408 446 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 148 187 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 316 354 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 274 313 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 357 396 IPR001680 GO:0005515
Aed4g0705 469 SMART WD40_4 232 271 IPR001680 GO:0005515
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 191 - -
Aed4g0705 469 Gene3D - 134 469 IPR015943 GO:0005515
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 315 - -
Aed4g0705 469 SUPERFAMILY WD40 repeat-like 144 446 IPR036322 GO:0005515
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 196 IPR001680 GO:0005515
Aed4g0705 469 Pfam WD domain, G-beta repeat 150 187 IPR001680 GO:0005515
Aed4g0705 469 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515
Aed4g0705 469 Pfam WD domain, G-beta repeat 195 229 IPR001680 GO:0005515
Aed4g0705 469 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Aed4g0705 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0705 236 445 Miscellaneous Gene Families AT5G08390 30.093 9.54e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0705 K12862 - gmx:100775526 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0705 4 5901812 5908225 Aed4g0705 4 5901812 5908225 ECH