Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0703 ATGATAAGGTTACGACATGGAGCTCACAAGTTTGGTTGTTTTGGTAAATCATGGCCTTCCTTCCATCCCCTCTCATCTCCGTTTCACTGTTCATTCCCAGTTACAGATCCCACTAAACTCCACCGAGTTCTCGAACGTTGTAGAGTCTCTATGGATTTGACAACCGCCACTAAAACCCACGCAAGAGTTGTTGTACTTGGCTTTGCCACTTACCCTTCTGTTGTGTCATCTCTGATATCAACTTATGCTCAATGCCACCAACCCCACATTGCCCTTCGCGTTTTCTCCAATGTTTTGAACCTCTTTAATATGAATTTGGTGATTGAGAGTTTAATGAAAGCTGGACAATGTGACATTGCCAAGAGGGTGTTTGGCAAAATGCCTGATAGAGATGTGGTCACATGGAACTCCGTGATTGGAGGTTATGTCAAGAACTCACGCTTCTTCGATGCATTGAGTATTTTCCGGAGGATGCTGAGTGCTAAGGTTGAGCCTGATGGGTTCAGCTTTGCTTCTGTGATTACTGCTTGTGCGCGCCTTGGGGCTCTTTGCAATGCCAAGTGGGTACATGGTTTGATGGTTGAGAAAAGGGTTGAGCTGAATTATATATTGAGTGCTGCGTTGATTGACATGTATGCTAAGTGTGGTAGGATTGATTTTTCAAGACAGGTTTTTGAGGAGGTTGCGCGTGATCATGTGTCGGTTTGGAATGCTATGATTAGTGGGTTGGCAACTCATGGACTTGCTGTGGATGCGACTGTGGTGTTTTCAAGGATGGAGATGGAGTGTGTTTTGCCGGATTCTATTACTTTTATTGGGATTCTGACTGCTTGCAGCCACTGTGGATTGGTTGAAGAAGGTCGCAAGTATTTTGATATGATGCAGAACCATTTCATGATTCAGCCGCAGCTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCTCATGGAAGAGGCCTATGGTGTGATTAAGGTGATGCCTATGGAGCCTGATGTTGTCATCTGGAGAGCACTTTTGAGTGCTTGTAGAACCTACAAAAACAAAGAACTAGGTGAAGTTGCCATTGCGAATATATCCCGCTTAGAGAGTGGAGACTTTGTGTTGTTGTCAAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGAGTGAGACATTTGATGAAGAAGGGAGGGGTTCGGAAAAGCTGTGGTAAAAGTTGGATTGAATTGGGGGACAGCATTCACCAATTCAATGCAGCTGATCTGTCTCATGCTGAAATGAAATCAATTTACAGAGTGCTGGAAGGTTTGATCCAGAGAGCTAAGTTGGAGGGATTCACACCCTTGACTGATCTGGTTTTGATGGATGTTTCCGAAGAGGAAAAGGAGGAAAATTTAATGTTTCATAGCGAGAAGTTGGCTTTGGCCTATGGGGTCCTGAAAAGTAGCCCAGGAACAAAAATCAGGATTTCCAAAAACCTGCGTATCTGTCTAGACTGTCATAATTGGATTAAAATTGTGTCGAAAATATTGAACAGAGAGATAATTGTGAGGGATCGAATCCGTTTTCACCAATTTGAAGGTGGTGTTTGCTCTTGCAGAGACTACTGGTAG 1611 0.4376 MIRLRHGAHKFGCFGKSWPSFHPLSSPFHCSFPVTDPTKLHRVLERCRVSMDLTTATKTHARVVVLGFATYPSVVSSLISTYAQCHQPHIALRVFSNVLNLFNMNLVIESLMKAGQCDIAKRVFGKMPDRDVVTWNSVIGGYVKNSRFFDALSIFRRMLSAKVEPDGFSFASVITACARLGALCNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRIDFSRQVFEEVARDHVSVWNAMISGLATHGLAVDATVVFSRMEMECVLPDSITFIGILTACSHCGLVEEGRKYFDMMQNHFMIQPQLEHYGTMVDLLGRAGLMEEAYGVIKVMPMEPDVVIWRALLSACRTYKNKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRHLMKKGGVRKSCGKSWIELGDSIHQFNAADLSHAEMKSIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLALAYGVLKSSPGTKIRISKNLRICLDCHNWIKIVSKILNREIIVRDRIRFHQFEGGVCSCRDYW 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0703 536 Pfam E motif 349 408 IPR046848 -
Aed4g0703 536 Gene3D Tetratricopeptide repeat domain 38 206 IPR011990 GO:0005515
Aed4g0703 536 Pfam DYW family of nucleic acid deaminases 444 536 IPR032867 GO:0008270
Aed4g0703 536 Pfam PPR repeat 207 230 IPR002885 -
Aed4g0703 536 Pfam PPR repeat 270 296 IPR002885 -
Aed4g0703 536 Pfam PPR repeat 235 262 IPR002885 -
Aed4g0703 536 Pfam PPR repeat 306 331 IPR002885 -
Aed4g0703 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Aed4g0703 536 PANTHER OS07G0578800 PROTEIN-RELATED 35 482 IPR045215 GO:0003723|GO:0009451
Aed4g0703 536 Gene3D Tetratricopeptide repeat domain 208 429 IPR011990 GO:0005515
Aed4g0703 536 Pfam PPR repeat family 130 179 IPR002885 -
Aed4g0703 536 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Aed4g0703 536 TIGRFAM PPR: pentatricopeptide repeat domain 235 267 IPR002885 -
Aed4g0703 536 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Aed4g0703 536 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0703 Aed-Chr4 5897107 5899527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0703 105 536 Glycoside Hydrolase AT3G49170 38.724 3.72e-106 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0703 - - gmx:100788229 946.421