Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0681 ATGGCCTCTACAAAGAGAATTGGTGTTCTAATTATATGGTTTGCACTGGTTTATTATGTGGATGCTACAAAAAGAGTAATGCCACTTTCTAGTCCTGATATCTACAAGGGTAAAAATGTAGCTAAGGATAAAATTGCTCCAGGTGAGAAGATAAATAATGTCATGAGCTTTGGAGCCAAACCTGATGGCAAGTTTGATTGCACTCAGGCTTTCATGGATGCATGGAGAGCAACATGCAAATCCACAGAGAAATCCAGGCTTCTGATCCCTGAGGGAAGATTTGTGGTTTCTACAATGTTTTTTGCAGGGCCATGTTTGTTTCCAGGGCCCATAACAATCCAAGTTATAGGCACTGTTTTAGCCACAACAGATATCAGTGAGTATGTGAACGGTGAATGGCTCATGTTTGAGGACCTGGACGGTCTAAAAATTCTTGGTGGTGGCACTTTTGATGGCAGGGGTAAGGAATCATGGGCAACAACTGAGAATTGTGAAGCAGATGAAACCAGCTCTTGCGTCAGAAATCCTAGTAGTCTTTACTTCCACAAAGTGAAGAATGGACTTATACAGAACATAAAATCCGTAGATGCCAAAGGCTTTCATATATTTGTCACTAACTGTGTCAACATTAGACTTCGATTACTGAAGATCACTGCACCAGAAACAAGCCCCAACACCGATGGAATTCATATTAGCTACTCCGTGGATGTAAAATTGTCCAAAAATACCATTCGAACGGGAGATGATTGTGTTTCCATGATACAAGGAGTCCAAGACATTGCCATCAACAAACTGGCATGTGGTCCTGGACACGGTATTAGTATTGGAAGTCTTGGAAAGTATGAGGATGAGCTAGAAGTGAAGAACATTCGAGTCACGAACTGCACGATGACTGCCACAACCAATGGCCTCAGAATCAAGACATGGCCAGAAAAGTTTCCAGGTTCAGCATCAGGGATCACCTTCAGTAACATTATCATGGAAAAGGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGCGAACCAGCAAATTGCCAAAAGAAGCCTTCACTTGTACAGATAAAAGATGTTGTTTTTGCAAATATAAAGGGAACCAGTACTTCACCAATTTCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGGTGTTAAACTCAAGAACATAGACCTGAGTCCTGGTGGTTCTAGATGTGCCAACATTAAACCAATCTATGTGGGTGTGCAAAGACCAGCAGCATGCTTATAA 1257 0.4145 MASTKRIGVLIIWFALVYYVDATKRVMPLSSPDIYKGKNVAKDKIAPGEKINNVMSFGAKPDGKFDCTQAFMDAWRATCKSTEKSRLLIPEGRFVVSTMFFAGPCLFPGPITIQVIGTVLATTDISEYVNGEWLMFEDLDGLKILGGGTFDGRGKESWATTENCEADETSSCVRNPSSLYFHKVKNGLIQNIKSVDAKGFHIFVTNCVNIRLRLLKITAPETSPNTDGIHISYSVDVKLSKNTIRTGDDCVSMIQGVQDIAINKLACGPGHGISIGSLGKYEDELEVKNIRVTNCTMTATTNGLRIKTWPEKFPGSASGITFSNIIMEKVKNPIIIDQEYECEPANCQKKPSLVQIKDVVFANIKGTSTSPISVDLRCSKQFPCQGVKLKNIDLSPGGSRCANIKPIYVGVQRPAACL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0681 418 SUPERFAMILY Pectin lyase-like 49 418 IPR011050 -
Aed4g0681 418 SMART pbh1 287 308 IPR006626 -
Aed4g0681 418 SMART pbh1 207 233 IPR006626 -
Aed4g0681 418 SMART pbh1 234 255 IPR006626 -
Aed4g0681 418 SMART pbh1 317 338 IPR006626 -
Aed4g0681 418 PANTHER - 2 417 - -
Aed4g0681 418 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Aed4g0681 418 Gene3D - 39 416 IPR012334 -
Aed4g0681 418 PANTHER POLYGALACTURONASE 2 417 - -
Aed4g0681 418 Pfam Glycosyl hydrolases family 28 79 405 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0681 Aed-Chr4 5763110 5766757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0681 53 417 Glycoside Hydrolase AT4G18180 43.928 8.62e-102 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0681 K01213 - gmx:106796220 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0681 4 5763110 5766757 Aed4g0681 4 5763110 5766757 ECH