LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0623	ATGTTCTTCAGCGGCGATTCCTCTGGTCGTAAGCGTGTTGATTTAGGTGGTCGCAGCTTGAAGGAACGGGATAGGAATAATCTTCTGGAGCAGACGCGTTTGGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCCGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAATCTAAATTACGAGAGAAATTCCTTAGTATCAATGGGAAGAACTTCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGACTGGGGATATTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTACCAAGTGAAGCAATTTGTATATACCTGTATTCGTGCTGTATATCAGAATAGGAATCAGTTGAAGGATCAGCTTTTATTGACTCAAAAGGAATTTAATGCATCAGCTATTCCTTTATTGGAAATCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGATAGTAGGATCTCTGTCTCAAAACAATGCATTTGGCCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACCGTTGTAATATGTCACATTGGTCAGAAGCCATGTATCTGTTCGCATACTGATCCAGTATATAGCTTCTCATCACAGATCCTTACAATTCCTTTCCTGTGGCATGTTTTTCCAAACTTAAAACAGGTATTTGCAAAACAGGGCCTGAGTCAACATTACGTTCATCAGATGGCAACATGGGTGCCAAATCTGATTAGTTCCCTACCTAAGAATATAACAGATGAGTTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCCATAGACCTTGCTGCTGTTATTACATTTTTGCTGGAATCTCACCCATCCCTGACAAGATCTGATGGTAGAGAGAATTCTTCTATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGAATCAAAAAATTTGTAATGCCATAGATACTCGTTTCCTTTTGCAATTGACAAATATATTATTTAGAGATTTTTCGTCTGCCAATGGTTCAGATCATGATGAAAGGCAGGTTGCGGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAATACATTGCCACTTGAAAGGATTATGACGGTGCTTGCCTACAGAACTGAACTTGTTCCTATACTCTGGAATTTTATGAAACAGTGCCATAAGAATAAAAAATGGTCATCTTTGTCCGAACGGCTATCACACCTCTCAGGTGATGCGCCTGGTTGGCTGTTGCCTCTTTCTGTATTCTGTCCTGTTTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCGCTGTCACTGAAGGATATTAGAAGCCTTATCATTCTGTTAAAGCAGGCTCTGTGGCAGCTATTGTGGGTGAATCATACCACGTCTGCTAATTCAGTAAAATCTGTTCCAGTTAGCACAGCTATTAAAAAGCAGTCTGAAGCCATTCAACAAAGGGTTAGCACTGTAGTGTCTGAGCTTCTGTCCCAGGCTGTTATGGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATATTCACGTCTCAACTAGCTACTGCTAGGCAAAGACATGGATCTCAGGCTGTTTATACTAGAAATCGGTTCAGAATACGGCGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTGGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCCACATTCTTTTTGAGCAAATTGAAACAAAATCCTGGATTAGTTCTGACTTCTGAACATTCCTCCAAATTGATCCTACATTATGAGCGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCCGGGGGAAAGAACCTTCGTGTCACTAATGAGAATATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGGTTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAATTTTTGAAGTTTGTGACGGGCTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTAATGATTCGGAGCAAGCTCTTGAACGATTACCGACATCAGCTACTTGTATGAACTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCACATGGAAACCAAATTACTGTATGCCATAAACGCTGATGCTGGCTTTGATTTGAGTTAA	2838	0.3999	MFFSGDSSGRKRVDLGGRSLKERDRNNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSINGKNFQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQETGDIVRLFAGVDYSSTCALVNYQVKQFVYTCIRAVYQNRNQLKDQLLLTQKEFNASAIPLLEILVLLIDPKLPWSCKIVGSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLERVLTVVICHIGQKPCICSHTDPVYSFSSQILTIPFLWHVFPNLKQVFAKQGLSQHYVHQMATWVPNLISSLPKNITDEFPTYACLLGNILETGGIALSRPDCSFDMAIDLAAVITFLLESHPSLTRSDGRENSSIAEDEMTGEDEVMEVALDRKLNQKICNAIDTRFLLQLTNILFRDFSSANGSDHDERQVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTELVPILWNFMKQCHKNKKWSSLSERLSHLSGDAPGWLLPLSVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLKQALWQLLWVNHTTSANSVKSVPVSTAIKKQSEAIQQRVSTVVSELLSQAVMENTRANEILKQAAFLIPFTSRVKIFTSQLATARQRHGSQAVYTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKAMFEGILVDLPFATFFLSKLKQNPGLVLTSEHSSKLILHYERDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENIRQQSSHFLRGFQQLIQKGWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSEHYVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFQYLEPLFCIQRAGGNDSEQALERLPTSATCMNLLKLPPYKSKEHMETKLLYAINADAGFDLS	945

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0623	945	ProSiteProfiles	HECT domain profile.	660	945	IPR000569	GO:0004842
	Aed4g0623	945	Gene3D	Hect, E3 ligase catalytic domain	732	788	-	-
	Aed4g0623	945	ProSiteProfiles	IQ motif profile.	45	72	IPR000048	GO:0005515
	Aed4g0623	945	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	708	945	IPR044611	GO:0000209\|GO:0061630
	Aed4g0623	945	PANTHER	BNAC01G43970D PROTEIN	708	945	-	-
	Aed4g0623	945	SUPERFAMILY	Hect, E3 ligase catalytic domain	628	937	IPR035983	GO:0004842
	Aed4g0623	945	Gene3D	Hect, E3 ligase catalytic domains	590	709	-	-
	Aed4g0623	945	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	1	591	IPR044611	GO:0000209\|GO:0061630
	Aed4g0623	945	Gene3D	Hect, E3 ligase catalytic domain	827	944	-	-
	Aed4g0623	945	CDD	HECTc	639	943	IPR000569	GO:0004842
	Aed4g0623	945	SMART	hect_3	658	945	IPR000569	GO:0004842
	Aed4g0623	945	PANTHER	BNAC01G43970D PROTEIN	590	709	-	-
	Aed4g0623	945	PANTHER	BNAC01G43970D PROTEIN	1	591	-	-
	Aed4g0623	945	Pfam	HECT-domain (ubiquitin-transferase)	709	945	IPR000569	GO:0004842
	Aed4g0623	945	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	590	709	IPR044611	GO:0000209\|GO:0061630
	Aed4g0623	945	Gene3D	Hect, E3 ligase catalytic domains	710	823	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0623	Aed-Chr4	5305357	5337733	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0623	K10589		-	gmx:100787467	1680.23

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g0623	4	5305357	5337733	Aed4g0623	4	5305357	5337733	ECH