LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0621	ATGGCGATGACGGCGTCGCAGTTGCGGTGGGGGTGGAGGCCGACGCCGAAGCAGCAGCAACGACGTCGTATGGTTCCGGTGGTGTGTTCCATCGCTTTAGACAACGCGCAGAACAAAGAGAGAGTTAAACTGAAAAAGCTGTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACCGTTCAACAATTCACCGACGCTCTCGAAAAGTACGACTTCGACGCCGAAATGGGAACCAAGGCACGTTCTCCACATTTCAATTCAACGTGTCTAGTTAAGGGCACTGTTTTTGCCACGGATAACAGTGGAGCTTATGTTGACATCACTGCGAAGTCCACGGCCTACTTGCCTCTGCAAGAGGCTTGCATCCACAGAATTAGGAATGTGGAAGAAGCAGGCATAACTCCTGGCATGAGAGAGGAATTTATGATCATTGGTGAGAATCAATCAGATGATACCTTGATCTTGAGTTTGAGGTCTATGCAATATGACCTTGCATGGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTATTCCATTTTCACAGATATCATCGAAATCAGCTGGAGAAGAGCTTCTTGATCAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTTCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAACCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGAGACAGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACGCCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAACCAGAGAGTGGATTAACTCTGAGTGGTGAAGGAATCTTAGGACCACTTGCTTCAGACTTGCCTCTAGAGGGACTGGATCTGACTGAGGTACCCCCAGCTGAAGATTCATGA	1233	0.4769	MAMTASQLRWGWRPTPKQQQRRRMVPVVCSIALDNAQNKERVKLKKLFEEAYERCRTAPTEGVSFTVQQFTDALEKYDFDAEMGTKARSPHFNSTCLVKGTVFATDNSGAYVDITAKSTAYLPLQEACIHRIRNVEEAGITPGMREEFMIIGENQSDDTLILSLRSMQYDLAWERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFIPFSQISSKSAGEELLDQEIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFVDIGGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGEGILGPLASDLPLEGLDLTEVPPAEDS	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0621	410	Pfam	S1 RNA binding domain	259	328	IPR003029	GO:0003676
	Aed4g0621	410	Pfam	S1 RNA binding domain	181	247	IPR003029	GO:0003676
	Aed4g0621	410	Gene3D	-	257	336	IPR012340	-
	Aed4g0621	410	ProSiteProfiles	S1 domain profile.	95	165	IPR003029	GO:0003676
	Aed4g0621	410	PANTHER	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	21	410	-	-
	Aed4g0621	410	SUPERFAMILY	Nucleic acid-binding proteins	179	251	IPR012340	-
	Aed4g0621	410	PANTHER	30S RIBOSOMAL PROTEIN S1	21	410	-	-
	Aed4g0621	410	SUPERFAMILY	Nucleic acid-binding proteins	259	338	IPR012340	-
	Aed4g0621	410	ProSiteProfiles	S1 domain profile.	183	247	IPR003029	GO:0003676
	Aed4g0621	410	CDD	S1_RPS1_repeat_hs4	260	328	-	-
	Aed4g0621	410	Coils	Coil	345	365	-	-
	Aed4g0621	410	CDD	S1_RPS1_repeat_ec2_hs2	183	247	-	-
	Aed4g0621	410	ProSiteProfiles	S1 domain profile.	260	328	IPR003029	GO:0003676
	Aed4g0621	410	Gene3D	-	86	177	IPR012340	-
	Aed4g0621	410	Gene3D	-	178	256	IPR012340	-
	Aed4g0621	410	SUPERFAMILY	Nucleic acid-binding proteins	97	190	IPR012340	-
	Aed4g0621	410	SMART	S1_6	181	247	IPR022967	-
	Aed4g0621	410	SMART	S1_6	93	165	IPR022967	-
	Aed4g0621	410	SMART	S1_6	258	328	IPR022967	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0621	Aed-Chr4	5283442	5287777	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0621	K02945		-	gmx:100806905	738.799

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g0621	4	5283442	5287777	Aed4g0621	4	5283442	5287777	ECH