Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0619 ATGAGTCTCATTCGTTGGTCTTTCATCCTATGGATGCTTTGTATCCATAATTTGGATAATGTGGAAGGAAGATACCACAATCACAAGAAGCAGAAGAAAAATTCCCCTGCTCCTAAGCCACCTGTTGAGTCCCCTGCACCACCAGAGGACGCTCCTTCAACCCCTTCCAACCCCCCAAGTGTTCCCTCTGACCCTTATCCCAATGACCCTTCAGGCTGCATTTTCGATGTCAGATCCTTTGGTGCAGTTGGAGATGGTTCAGCTGATGACACAGATGCATTCGTGGCAGCTTGGAAAGAAGCATGTGCAGTAGAGTCAGGGGTTGTTCTTGTTCCTGAAGATTACTGCTTCAAGATCACTTCAACTATCTTCACAGGTCCATGCAAGCCAGGACTAGTATTTCAAGTGGATGGTACTCTCTTGGCACCAGATGGACCAGAATCTTGGCCTAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGAAATGGGGAAGAGTGGTGGGATCTTCCTTGCAAACCTCACAGGGGTCCAGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGTGGGGTGAAAATTCAGAACAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATCGATAAGTTGTCAATTTCTGCGCCTAAACTCAGTCCCAACACTGATGGAATCCACTTAGGAAACACAAGGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGACGATTGCATTTCAATTGGACCCGGGTGCTCAGACGTGGACATAGATGGTGTTACTTGTGATCCTACCCACGGCATTAGTATTGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTCTCAAACTTAACTGTCCGAAACACAATCATAAAGGAATCAGACAATGGCCTAAGGATCAAGACATGGCAAGGAGGAACGGGGTCAGTGACAGGCCTGAGATTTGAGAACATCCAAATGGAGAATGTGAGGAACTGCATAATCATTGACCAGTACTACTGCATGACCAAGGAGTGTCTGAACCAAACCTCAGCTGTGCATGTAAACGATGTGGCATATAGGAACATAAAGGGTACTTATGATGTGAGAACCCCTCCTATACACTTTGCATGCAGTGACACTGTGGCTTGCACCAACATAACACTCTCTGAGATTGAGCTTTTGCCATACGAAGGGGAGTTACTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAAACCATGACTATACCCCCACTTGATTGCTTAAGAGAGGGTGAGCCTGATACTGTTGTGGATCTCTCAGCATATGAATGTAGGAGTTAA 1416 0.4583 MSLIRWSFILWMLCIHNLDNVEGRYHNHKKQKKNSPAPKPPVESPAPPEDAPSTPSNPPSVPSDPYPNDPSGCIFDVRSFGAVGDGSADDTDAFVAAWKEACAVESGVVLVPEDYCFKITSTIFTGPCKPGLVFQVDGTLLAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEEWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISAPKLSPNTDGIHLGNTRGVGIYNSMISNGDDCISIGPGCSDVDIDGVTCDPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFENIQMENVRNCIIIDQYYCMTKECLNQTSAVHVNDVAYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVDLSAYECRS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0619 471 MobiDBLite consensus disorder prediction 26 68 - -
Aed4g0619 471 Pfam Glycosyl hydrolases family 28 109 422 IPR000743 GO:0004650|GO:0005975
Aed4g0619 471 PANTHER - 4 460 - -
Aed4g0619 471 MobiDBLite consensus disorder prediction 38 66 - -
Aed4g0619 471 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 4 460 - -
Aed4g0619 471 SUPERFAMILY Pectin lyase-like 70 468 IPR011050 -
Aed4g0619 471 Gene3D - 62 457 IPR012334 -
Aed4g0619 471 SMART pbh1 236 262 IPR006626 -
Aed4g0619 471 SMART pbh1 345 366 IPR006626 -
Aed4g0619 471 SMART pbh1 316 337 IPR006626 -
Aed4g0619 471 SMART pbh1 263 284 IPR006626 -
Aed4g0619 471 SMART pbh1 286 306 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0619 Aed-Chr4 5266634 5269393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0619 1 458 Glycoside Hydrolase AT1G48100 70.435 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0619 - - gmx:100785528 905.59