Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0616 ATGGAAGTAGCTCTTTCCCTTCAAGTACAAAAGCCAAATTTGCAGACAACAGGTCGCAAAATTTCATGTACTGGATCTCAGAAGGATCTTTGGCTTGTTGTGAGAGAAGGATCTCTAAGTGATGTAGAGTTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTTGGGCTGACCCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCTGCTGGTGCAGATCCTGATGCCCGAGATGGAGAGTCAGGATGGAGTAGCCTTCACAGAGCTATGCATTTTGGTCATCTTGCCGCAGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTGGATCTCTTTTCTGGATCTGTATTTCAGGTTCTTGGAAATGAACTCAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAGTTAATTTCTGCGGGGAAATTCCACAGTGTGGCACTTACTGCTCGTGGAGAAGTGTATTCTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACAGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTCGAGTATCTTCTTTGAGGTCAAGAATTGTTGCTGTTGCTGCAGCAAACAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTTTATACTTGGGGTTGCAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTGGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAGCACTCCGTTAAAATTTCATCGCAAGGAACGACTTAGTGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATAGCTCTTACAGATGACGGTGCATTATTTTATTGGGTCTCCTCAGATCCCGACCTTAGATGCCAACAGTTATATGCTATGTGCGGAAGGAATATGGTGAGCATATCAGCGGGCAAGTACTGGACTGCTGCTGTTACAGCTACAGGTGATATTTACATGTGGGATGGAAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAGACACATTTACTAATTGTGGCTTCACTGTATCATCCTGTCTACCCTCCCAACATGATTGAGAATCCTCAGAAACTCAAGTTGAATAACAAGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATGGATTCCAGTAACATGATATCTAGTGTACAAAATGATACTTTCAAGCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGATTGTCTAGTGGAGCCACGGAATGCTGTACAATTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAGGAAACATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATATTTGCAGTTTCGTCACATACTGTAGCAAGTGCTTCACCAGATATTCTGGCTAACCTTGAGAGGTTGTTAGATCAGAGATCATCTGAGCCATGGAGTCACCATCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGTAATAAACCCATGAAAATGTCTGGAATGAAATTGGAGAAAGTCCAAAGCCTAGATTCCTTTCTACAGCCCAAGGACGATCCTAATAAAGAAATCTCTAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAACAGATTGAGATGCTTGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCACTTGAGAGCTCACTTTCAGAACTAGGTGTTCCTGTTGAGACATCACAGAGTAAAGAATCATCTTCTATGTTACCAGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCGAAAAAACAAAGGAGAAAGAGTGGCAAATCAAACATAGAGCAGACAGAAGTAGAATCTGTTTACTCTAAAAGTGAAGCCATTCTTAAATCTGATGAGTTGGACATTGACATCATGGGGGTTCCTGATTCAAAGGTGGAAGAGGATGCCGTGTGTAAACTGAACACAGCCAACCAGGGTGCAAAAGATTTAGCTTTTGTTGTGCAGAATAAAGATGCTTTAGAGTTGCTGAAAGCCAAGGGTCCGTCACCAAAGGCTTCAAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCGGAAGAGGTGGCTCCCCCTCCCCCTCCACCACCAACACCGAAAAGTGATGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTTCTTCTCTTCGTGAAATCCAGGATGAACAAAGCAAAATAAAGGTGAACAAACCAGTCGGGAGAAAAGATAAGGTGGAAGATCTTTCTGATTTTGGCAGTGGGGGCAAAATAAAGCTGAGTTCATTTCTTCTTTCTCCTTCCAGCCCAATACCTGTCACTTCATCTCGAAGTTCCCAGGTATCTGATGGAGAAATAAACACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCAACTGTCTCGGCCATCGCTAAGGGACATCCAAATGCAACAGGTAAAGAAACTAGGCCTTTCACATAGTCCAAAGACTAGCACAGCTGGATTTTCCATCCCTACAGGCCAAGGCTCGCCATCTGAAGCCACCGGAGGGAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCGTCCTCGATTCGTTGTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGAAAGCAATCTTGA 3258 0.4438 MEVALSLQVQKPNLQTTGRKISCTGSQKDLWLVVREGSLSDVELALASLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRAMHFGHLAAASILLQHGASITLEDSKSRIPVDLFSGSVFQVLGNELSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYSWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSRIVAVAAANKHTAVVSDLGEVYTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLSVVSIAAGMVHSIALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDIYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENPQKLKLNNKDDMEELNEDILFEDMDSSNMISSVQNDTFKQRSIPSLKSLCEKVAADCLVEPRNAVQLLEIADSLGADDLRKHCEEIVMRNLDYIFAVSSHTVASASPDILANLERLLDQRSSEPWSHHRLPTPTATFPAIINSEEDDSEIEFQRTRNKPMKMSGMKLEKVQSLDSFLQPKDDPNKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKSALESSLSELGVPVETSQSKESSSMLPEGKGSKKGKLSKKQRRKSGKSNIEQTEVESVYSKSEAILKSDELDIDIMGVPDSKVEEDAVCKLNTANQGAKDLAFVVQNKDALELLKAKGPSPKASKKKSKKGGLSMFLSGALDEAPEEVAPPPPPPPTPKSDGPAWGGAKFMKGSSSLREIQDEQSKIKVNKPVGRKDKVEDLSDFGSGGKIKLSSFLLSPSSPIPVTSSRSSQVSDGEINTPPWAASGTPPQLSRPSLRDIQMQQVKKLGLSHSPKTSTAGFSIPTGQGSPSEATGGSRWFKPEVETPSSIRCIQIEEKAMKDLKRFYSSVKIVRKQS 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0616 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Aed4g0616 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Aed4g0616 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Aed4g0616 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Aed4g0616 1085 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Aed4g0616 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Aed4g0616 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Aed4g0616 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Aed4g0616 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Aed4g0616 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Aed4g0616 1085 Gene3D - 23 142 IPR036770 -
Aed4g0616 1085 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1084 - -
Aed4g0616 1085 SUPERFAMILY Ankyrin repeat 31 136 IPR036770 -
Aed4g0616 1085 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Aed4g0616 1085 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Aed4g0616 1085 Gene3D - 143 391 IPR009091 -
Aed4g0616 1085 MobiDBLite consensus disorder prediction 755 773 - -
Aed4g0616 1085 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Aed4g0616 1085 SUPERFAMILY RCC1/BLIP-II 408 507 IPR009091 -
Aed4g0616 1085 Pfam Ankyrin repeats (3 copies) 36 127 IPR002110 GO:0005515
Aed4g0616 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Aed4g0616 1085 Coils Coil 709 729 - -
Aed4g0616 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1084 - -
Aed4g0616 1085 MobiDBLite consensus disorder prediction 926 952 - -
Aed4g0616 1085 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Aed4g0616 1085 MobiDBLite consensus disorder prediction 893 908 - -
Aed4g0616 1085 MobiDBLite consensus disorder prediction 862 1050 - -
Aed4g0616 1085 MobiDBLite consensus disorder prediction 755 801 - -
Aed4g0616 1085 MobiDBLite consensus disorder prediction 961 1042 - -
Aed4g0616 1085 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Aed4g0616 1085 SMART ANK_2a 96 125 IPR002110 GO:0005515
Aed4g0616 1085 SMART ANK_2a 62 91 IPR002110 GO:0005515
Aed4g0616 1085 Gene3D - 392 513 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0616 Aed-Chr4 5222852 5232330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0616 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 4.64e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0616 K24810 - gmx:100800604 1880.14