Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0607 ATGGCATCTCACATCGTTGGATATCCCCGCATGGGTCCCAAGAGAGAGCTGAAGTTCGCTCTCGAGTCTTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAGAAGGTGTCTGGTGATCTCAGGGCATCCATCTGGAAGCAGATGTCTGGTGCTGGGATCAAGTACATCCCCAGCAACACTTTCTCTCACTATGACCAGGTGCTCGACACCACCGCCACCCTCGGCGCCGTCCCACCCAGGTACGGCTGGACTGGCGGCGAGATCGGGTTCGACACCTACTTCTCCATGGCAAGAGGTAACGCTACCGTGCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATTGTCCCTGAATTGGGACCTGATGTGAACTTCGCCTATTCTTCTCACAAGGCTGTTGATGAATACAAGGAGGCCAAGGCGCTAGGAGTTGATACTGTCCCCGTCCTCGTTGGCCCTGTTACATACTTGTTGCTCTCCAAGCCTGCCAAGGGAGTAGAGAAATCCTTTTCTCTCCTCTCTCTTCTTCCCAAAGTTCTTGCTGTCTACAAGGAAGTTATTGCTGACCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAGCCTACACTTGTCTTGGACCTTGAGTCTGACAAGTTGAAAGCATTCACTGATGCATATGCAGAACTTGCACCTGCTTTGTCTGGTTTGAATGTTATTGTTGCCACCTACTTTGCTGACATCCCTGCTGAGGCATACAAGACCCTCACATCTCTGAATGGCGTCACTGCTTATGTATTTGATTTGGTCCGTGGAGCCAAGACTCTTGATTTGATCAAGGGTGGATTTCCCAGTGGAAAATACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCTAATGACCTTGCTTCTTCTCTCGCTACATTACAGGATCTTGAGGGCATTGTGGGCAAAGATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACCGCTGTTGATCTTGTTAATGAGACCAAGTTGGATGACGAGATCAAGTCATGGCTAGCTTTTGCTGCCCAAAAGATTGTTGAAGTTAATGCATTGGCTAAGGCATTGTCTGGTAACAAGGATGAGGCCTTTTTCTCTGCTAATGCTTCAGCTCAGGCTTCAAGGAAGTCCTCTCCAAGAGTGACTAATGAGGCCGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCAGATCACCGCCGTGCAACAAATGTCAGTGCCAGACTGGATGCCCAGCAAAAGAAGCTCAACCTTCCAATCCTTCCAACCACCACTATTGGATCCTTCCCACAGACTGTAGAACTAAGGAGGGTGCGTCGTGAATTCAAGGCTAAGAAGATCTCCGAGGAAGAGTATGTTAAGTCCATTCAGGAGGAAATTCGCAAAGTTGTTGAACTTCAGGAAGAGCTTGATATTGATGTCTTGGTTCATGGAGAACCAGAGAGGAATGATATGGTTGAGTACTTCGGTGAGCAGCTGTCAGGATTCGCCTTCACCGTTAATGGGTGGGTGCAATCCTATGGTTCCCGTTGCGTGAAGCCACCAATCATCTATGGTGATGTTAGCCGCCCAAAGGCAATGACTGTCTTCTGGTCATCTCTGGCTCAGAGCTTTACCAAGCGCCCAATGAAGGGAATGCTTACCGGCCCAGTTACCATTCTCAACTGGTCCTTTGTTAGAAACGACCAGCCTAGATCTGAGACCACCTACCAGATTGCTTTGGCCATCAAGGACGAAGTAGAAGACCTTGAAAAGGCTGGCATCACTGTTATCCAAATTGATGAAGCTGCTTTGAGAGAGGGTCTGCCACTGAGGAAGTCAGAACAAGCTCACTACTTGGACTGGGCTGTCCACAGCTTCAGAATCACCAATGTTGGTGTCCAGGATACCACCCAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATCGACATGGACGCTGATGTTATCACCATTGAGAACTCTCGCTCCGATGAGAAGCTTCTGTCGGTCTTCCGCGAAGGTGTGAAGTATGGTGCGGGAATCGGCCCCGGTGTCTATGACATCCACTCCCCAAGAATACCACCATCTGAAGAAATCGCCGACAGAATCAACAAGATGCTTGCAGTGCTTGAGAAGAACATCTTGTGGGTGAACCCTGACTGTGGGCTCAAGACCCGTAAGTACACTGAGGTGAAGCCAGCCCTCACAAACATGGTTGCCGCAGCAAAACTCATCCGCAACGAACTTGCCAAGTGA 2292 0.4952 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSGDLRASIWKQMSGAGIKYIPSNTFSHYDQVLDTTATLGAVPPRYGWTGGEIGFDTYFSMARGNATVPAMEMTKWFDTNYHFIVPELGPDVNFAYSSHKAVDEYKEAKALGVDTVPVLVGPVTYLLLSKPAKGVEKSFSLLSLLPKVLAVYKEVIADLKAAGASWIQFDEPTLVLDLESDKLKAFTDAYAELAPALSGLNVIVATYFADIPAEAYKTLTSLNGVTAYVFDLVRGAKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLASSLATLQDLEGIVGKDKLVVSTSSSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALAKALSGNKDEAFFSANASAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKAKKISEEEYVKSIQEEIRKVVELQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSFTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPSEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVKPALTNMVAAAKLIRNELAK 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0607 763 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Aed4g0607 763 CDD CIMS_N_terminal_like 3 367 - -
Aed4g0607 763 Gene3D - 5 525 IPR038071 -
Aed4g0607 763 PIRSF Met_synth_MetE 1 763 IPR006276 GO:0003871|GO:0008270|GO:0009086
Aed4g0607 763 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Aed4g0607 763 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 759 IPR006276 GO:0003871|GO:0008270|GO:0009086
Aed4g0607 763 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Aed4g0607 763 Gene3D - 390 758 IPR038071 -
Aed4g0607 763 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 763 - -
Aed4g0607 763 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Aed4g0607 763 Coils Coil 460 480 - -
Aed4g0607 763 SUPERFAMILY UROD/MetE-like 397 759 IPR038071 -
Aed4g0607 763 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 1 763 - -
Aed4g0607 763 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0607 Aed-Chr4 5159555 5164516 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0607 K00549 - gmx:100802039 1449.11