Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0606 ATGGACAGGCTGATAAAAGTGGATCCAACAAACACGGTTCCAATAAGGATCGAGCCAGGCCAAAAGTGCCACGGCCAAATCACGTTGCGCAACGTGATGTACACCATGCCGGTGGCGTTCAGGCTTCAACCGTTGATCAAAACGCGTTACACGGTGAAGCCTCAATCCGGAATCATATCTCCGTTAGCCACGTTGACAATAGAAATCATCTACAACCTTCCACAGGGATCGACTCTCCCGCACTCTTTCCCACGCTCCGAGGACTCGTTCCTCCTCCACAGCGTCGTTGTCCCCGGCGCCACCGTCAAGGAACCATCGTCGATGTTTGAATCTGTTCCCTCCGATTGGTTCACCGCGAGGAAGAAACAGGTTTTCATCGACAGCGGCATCAAAGTCATCTTCGTCGGCTCGTTGATCCTTTCGCAGTTAGTCCACGACGGGTCCATTGATGAAATCAGGGAAGTGCTTGAACACAGTGAGGCTTCGTGGAGAGCCGTTGACTCCGTTGACCAGAACGGAGACACGCTCCTCCACGCGGCAGTTTCGAAACGCAGGCCCGACCTAGTTCAGTTGCTCCTCGAGTTCAACGCCGACGTGGAGTTAAAAAACCGTTCCGCCGACGCGACTGCGTTGGAAGCAGCGTGTTCCTCCGGAGAAGAATTGATCGTCGAGCTTTTGTTAGCTCACAAGGCGAATACGGAGAGGACCGAATCGTCTTCGTTGGGAGCGATTCATTTGACTGCGAGGGAAGGACACGTGGAGGTTCTGAGGTTGCTGCTGCTGAAAGGCGCGAGAGTTGACTCGTTGACTAAAGACGGTTACACCGCGTTGCATCTGGCGGTTGGAGAAGGTCGGATGGACTGCGTGAGGCTGTTGCTCGCGAACAGTGCGAGGACTGACATTCGCGATTCGCGAGAGGGTGACACGTGTCTGCACGTGGCGGCGGGTGTGGGAGACGAGAGCGTGGTGAAGCTTTTGTTGAGCAAGGGTGCTAATAAGGACGTGAGGAATTTTGGTGGTAAGACGGCTTATGATGTTGCGGCGGAGAATGGACACGCGCGCGTGTTTGACGCGCTGCGGCTGGGGGATGGGTTGTGCGTGGCGGCGAGGAGGGGGGAGGTGAGGAGTATTCAGAGGCTGATTGAGGGAGGTGCGGCGGTGAACGGGAGGGACCAGCACGGGTGGACGGCGCTGCACAGGGCGTGCTTCAAGGGGCGCGTGGAGGCGGTGAGGGCGTTGTTACTGGAGAGAGGGGTTGACGCGGACGCGAGGGATGAGGAGGGGTATAGTGCGCTGCATTGCGCGGTGGAGGCGGGGCATGCTGACGTGGCGGAGGTGTTGGTTAAGAAGGGCGTGGTGGATGTGGAAGCCAGGACAAATAAGGGTGTGACTGCTTTGCAGATTGCGGAGGCGTTGGGGTACGGTGGGATTGCGAGGGTGCTTGTTGTTGAAGCGGGACACGTGGCGGATGGAGAACAGCAACAGGCTGGGGTTGGGGAGATGAAGAAAGAAAAGAAAAAAAAGATTGGTAGAAGGAGGGAGATTCGGGGAAGCTTTGACCGGTCAATGGCTTTGGCTGTGCTCTAG 1587 0.5665 MDRLIKVDPTNTVPIRIEPGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLTIEIIYNLPQGSTLPHSFPRSEDSFLLHSVVVPGATVKEPSSMFESVPSDWFTARKKQVFIDSGIKVIFVGSLILSQLVHDGSIDEIREVLEHSEASWRAVDSVDQNGDTLLHAAVSKRRPDLVQLLLEFNADVELKNRSADATALEAACSSGEELIVELLLAHKANTERTESSSLGAIHLTAREGHVEVLRLLLLKGARVDSLTKDGYTALHLAVGEGRMDCVRLLLANSARTDIRDSREGDTCLHVAAGVGDESVVKLLLSKGANKDVRNFGGKTAYDVAAENGHARVFDALRLGDGLCVAARRGEVRSIQRLIEGGAAVNGRDQHGWTALHRACFKGRVEAVRALLLERGVDADARDEEGYSALHCAVEAGHADVAEVLVKKGVVDVEARTNKGVTALQIAEALGYGGIARVLVVEAGHVADGEQQQAGVGEMKKEKKKKIGRRREIRGSFDRSMALAVL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0606 528 Gene3D Immunoglobulins 1 132 IPR013783 -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 427 452 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 393 426 - -
Aed4g0606 528 Gene3D - 238 310 IPR036770 -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Aed4g0606 528 Pfam Ankyrin repeats (many copies) 380 433 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 306 337 - -
Aed4g0606 528 Pfam Ankyrin repeats (3 copies) 244 337 IPR002110 GO:0005515
Aed4g0606 528 Pfam Ankyrin repeats (3 copies) 164 234 IPR002110 GO:0005515
Aed4g0606 528 PRINTS Ankyrin repeat signature 322 336 IPR002110 GO:0005515
Aed4g0606 528 PRINTS Ankyrin repeat signature 273 288 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 393 426 IPR002110 GO:0005515
Aed4g0606 528 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Aed4g0606 528 Gene3D - 311 360 IPR036770 -
Aed4g0606 528 SMART ANK_2a 339 368 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 393 423 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 172 201 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 272 303 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 427 457 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 306 335 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 239 268 IPR002110 GO:0005515
Aed4g0606 528 SMART ANK_2a 206 235 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Aed4g0606 528 Gene3D - 133 237 IPR036770 -
Aed4g0606 528 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 528 - -
Aed4g0606 528 Gene3D - 361 495 IPR036770 -
Aed4g0606 528 SUPERFAMILY PapD-like 2 149 IPR008962 -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 272 303 - -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 239 267 - -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 306 338 IPR002110 GO:0005515
Aed4g0606 528 ProSiteProfiles Ankyrin repeat region circular profile. 427 452 - -
Aed4g0606 528 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Aed4g0606 528 SUPERFAMILY Ankyrin repeat 166 490 IPR036770 -
Aed4g0606 528 ProSiteProfiles Ankyrin repeat profile. 272 304 IPR002110 GO:0005515
Aed4g0606 528 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0606 Aed-Chr4 5135266 5136852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0606 261 511 Miscellaneous Gene Families AT1G07710 29.044 6.39e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0606 - - gmx:100782232 887.486