Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0592 ATGGACAAGATTTTTCTCACCACCTTTCATTCGAGGCAGGTCAAGGGGTCAACAAATTTCACAACGAAACCGAGAGTGAGTGATTTCCCATTTCCCAACGACAATGGCGAAAACCGCGAAACCCTAACCCTAACACCCCTTTCAGCAAAATTCTCCAGTGTCTTCAAAAGCCACTGCGCCATGGACTTCGATCACCACCTCACGGAGCTTTCCACCTCCTCGCCGTGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCCAGGACTTCCGCCGCCCGATCGAGGAAATCGCGAGGAGGACGCAGTCGATGCTCGACAGAATCGGCTCCGCGGAGAGTATCTGGGGCAGAGGCTCGGTGTTTCCCGGCGACGTCGACGACGCGTACGAGTGGCTCGTGAACGCGAACGACGACGTTCTGGAGCTGGTCGAGGAGCTGGTGGATGAGTTGCGGATGCTCAGGAAGGACGAGGGAGAGGAATGCGACGGGGCGGACCCGAAAGTGCCGTTTCATATACCGACAATTAAGAAGCCTCAGTATGCGTACAACATTGTCGTTAATAATGCGAACGAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAGGATGGTCAGCGGTATATTCATCCACTGGAGAAACTCTCTGTTTTAGATTTTGTTGATAAAGAAAATCTTGAGGATATTGTGCCAGTAAAGCCTACCTCATTAGAATGCACCCCTTTCAAGCTTGTGGATGATGTCAAAGGATTGAAGGAGGTGGCTGCAAAGCTGTCTTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGACTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTATTATAGATACTCTGAAGGTCCGCAATCATGTTGGACCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTACATTTGTAATATGTTTGATACTGGCCAGGCTTCAAGAGTGTTAAAGTTGGAGAGATATAGTCTGCAATATCTTTTGCAACACTATTGTGGAGTTACTGCAAACAAGGAATACCAGAGTGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTAAGATATGGAAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGAATCGAATTATTTGCATTGTCTAAGGAGTCTGAAGGCTGTGATAATCCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATCAAGCTATATGAGAAAGAGCTGCTGACAGAAGACTCGTACCTTCATATATATGGGTTGCGAGGGGCTGGTTTTAATGCACAACAGCTTGCTGTTGTTTCAGGGCTTTGGGAATGGCGTGACGGTCTTGCTCGTGCAGATGACGAGGGTCCTGGCTATGTATTGCCAAATAGAATTATTCTTGAAATCGCTAAACAGATGCCTGTCATTATAAGCAATCTACGGCGAATAGCAGGAAGGTCGCACCCATATATTGAGCATAGCCTTGATGTCATTGTCCACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTGCGTTTGAAAGAAGAACATGCAGCACGCTTGTCAAATGTAGTAGCCGCTAAGGATGGAACTGAAGTACCTCAGACGCTAAACTTAAAGGTTGGATCTGAAGCAACAGGAAGCATTGGAATTGAAAATGACATTTGTGTTGATATCACAGAAAATGGTCTGCTTTCTAATGACATGGAGGAGGAAAGTTTTCAGCATCAAGTGAAAGATGGACTAGCAGAAGTTAAGTCCGCACTCTCTACAGCGAAGAAGGGCAATGGAGAGGTGCTAAAAAGGCCTACTGGTGCTTTTGATGCGCCACTGCTGGGCAATTCTGCTTCAAAATGGAAGTTTGATCCTAATAAAAAGGTCAAGGAGGAGTTCAAGTCAGAACAGATTAAATCATCAGTCAATCTTCCATCCCAATTATTTTTGGGCAACAGTGGGAAGTCAAAACTAGTTGCAAAAACTTCAAGTGTAGCATCTCAAACATCAGACCCACAGAAGAAACCTGATTTGGGTTCAGTTTCTACCTCCACGCCCATTGGGATTGTAATGGTAGTCTCTGATTCAGACTCGGAGGATATGCTGCAGAATAAGCCTGAAGGCTCCAACAATCACCCAGGAAAAAATTCACTTGTGCCCAGGAAAAGAAGATGA 2277 0.4537 MDKIFLTTFHSRQVKGSTNFTTKPRVSDFPFPNDNGENRETLTLTPLSAKFSSVFKSHCAMDFDHHLTELSTSSPCIPSGEDFHFYYKFQDFRRPIEEIARRTQSMLDRIGSAESIWGRGSVFPGDVDDAYEWLVNANDDVLELVEELVDELRMLRKDEGEECDGADPKVPFHIPTIKKPQYAYNIVVNNANEPFEHVLLEKSEDGQRYIHPLEKLSVLDFVDKENLEDIVPVKPTSLECTPFKLVDDVKGLKEVAAKLSSVNEFAVDLEHNHYRTFQGLTCLMQISTRTEDFIIDTLKVRNHVGPYLREVFKDPTKKKVLHGADRDIVWLQRDFGIYICNMFDTGQASRVLKLERYSLQYLLQHYCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIELFALSKESEGCDNPLLEVYKRSYDVCIKLYEKELLTEDSYLHIYGLRGAGFNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIAKQMPVIISNLRRIAGRSHPYIEHSLDVIVHIVRHSMQNAAAFEEAALRLKEEHAARLSNVVAAKDGTEVPQTLNLKVGSEATGSIGIENDICVDITENGLLSNDMEEESFQHQVKDGLAEVKSALSTAKKGNGEVLKRPTGAFDAPLLGNSASKWKFDPNKKVKEEFKSEQIKSSVNLPSQLFLGNSGKSKLVAKTSSVASQTSDPQKKPDLGSVSTSTPIGIVMVVSDSDSEDMLQNKPEGSNNHPGKNSLVPRKRR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0592 758 Pfam HRDC domain 465 529 IPR002121 GO:0003676
Aed4g0592 758 Gene3D HRDC domain 451 544 IPR044876 -
Aed4g0592 758 SUPERFAMILY Ribonuclease H-like 177 442 IPR012337 -
Aed4g0592 758 CDD Rrp6p_like_exo 239 431 - -
Aed4g0592 758 MobiDBLite consensus disorder prediction 695 758 - -
Aed4g0592 758 Coils Coil 138 158 - -
Aed4g0592 758 Pfam 3'-5' exonuclease 245 408 IPR002562 GO:0003676|GO:0006139|GO:0008408
Aed4g0592 758 Gene3D - 171 450 IPR036397 GO:0003676
Aed4g0592 758 ProSiteProfiles HRDC domain profile. 462 542 IPR002121 GO:0003676
Aed4g0592 758 PANTHER 3'-5' EXONUCLEASE 61 708 - -
Aed4g0592 758 MobiDBLite consensus disorder prediction 695 750 - -
Aed4g0592 758 Pfam PMC2NT (NUC016) domain 72 152 IPR012588 GO:0000176|GO:0006396
Aed4g0592 758 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 61 708 IPR045092 GO:0000175|GO:0000467
Aed4g0592 758 SUPERFAMILY HRDC-like 447 537 IPR010997 GO:0000166|GO:0044237
Aed4g0592 758 SMART 35exoneu6 243 412 IPR002562 GO:0003676|GO:0006139|GO:0008408
Aed4g0592 758 SMART hrdc7 462 541 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0592 Aed-Chr4 5019175 5029127 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0592 K12591 - gmx:100804872 1053.12