Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0577 ATGCTAGCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACGCTGCAACGCCGTTCCCAACCACCTCACTTCCTCCTCTCCACCCCTCTCTTCTTCCCTCGCTTCACCGCTTCCCGCAAATGCAGCTTCCGCTCGCTCCTTTCCGCCAACAACGCTCGCCGTCGCCGCGCCGTCAGAGCTTCCGCGGACTCGCCGGAGCTGTCAGAGTCTGTTGCTGACGCTGGCGCCCTGCAGCCGTACTCCGTGAAGATTCCCGTCGGCGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGCTCTGTTACAGTTACAGACGGAGAGACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTAGTGAACCATCTGACTTTTTCCCTCTTTCTGTTATTTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGTGGATTTTTTAAGCGAGAGGGAAAGATAAAAGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTACGTCCTACAATGCCAAAGGGCTTCTATCATGAAACTCAAATATTATCTTGGGTTTTTAGCTATGATGGATTGCACTCCCCTGATTCTTTGGCTATCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCAATGTCAAAAGCAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGTGATAAGTATATTGTAAATCCTACAACTGAGGAGATGGAACACTCTGAGTTGGACCTCTTGCTGGCTGGTACAGATAGTGCAATATTGATGATCGAGGGCTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTGAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCTTTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATCAAGTTGCCTCCTCCTGAACTTTATGAACATGTTGAAGCAATTGCCAGTGATGAGTTAGTAAAAGTTCTTCAAATTAGAAACAAAATACCCAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTGAAGATACTCACAGAAAATGGGTATGTCTTGAATGATTCAACACTGAGGAGTAATTCTGAGACCATTGCGGAGATTCTTGAGGTTGAGGACGAAGATGAGGAGGTAATTGTTGACGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTCCACGTAAACCAGCCCTTTTATTTTCTGAGGTGGATGTGAAGTTGGTATTTAAGGAAGTTACATCAAAATATTGGAGGAAGCGTATAGTAGAGGGGGGGAAAAGGAGTGATGGGCGAACACCTGATGGAATACGTCCAATCAACTCGAGATGTGGTCTATTACCTAGAGCACATGGAAGTACTCTTTTTACAAGAGGCGAGACACAGGCACTAGCAGTTGTTACACTTGGAGATAAACAAATGGCGCAAAGAATTGACACTCTTGATGGTGTTGATGAATTCAAGAGGTTCTATCTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGCTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCCCTTGAACAAATTTTGCCTTCTGAAGATGATTTCCCTTATACCATACGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGGGTTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAACTGGATCTGAGGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGAAATGAAGATGGTATAACTGCATTTCAAATGGACATTAAGGTGGGTGGGATTACTTTGCCCATCATGAGAAAGGCACTTCTACAAGCAAGAGATGGCAGGAAGCATATACTTGGAGAAATGATGAATTCCTCACCTCCTCCAGCAAAAAGGCTTTCCAAGTATGCTCCTCTGATTCATGTAAGACCAGATAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAGTAGACACCATTGATACAGAAGATGATGGCACTGTGAAAATATTTGCAAAAGATTTGCCTAGTTTAGAGAAGTCTAAAGCTATTATTAATAGTTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCCACATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTGTGTCATATAAGTGAACTGAGTTCAGGTTGGCTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGCATTGATGTAAAGCTTATAGAGGTAAATGAAAAGGGTCAGCTGCGCCTCAGTCACCGAGCACTGCTTCCTGATACAGATCCTGATACAGAAACTTCACCAAAAGATGGAATAGTGGGAGAAAAGACTGAACAGTCCAAGGATAAGTCTACCACTCCCAAAGTCATATCCTCTTCTAAAAGGAGTTCAGAGGATGATTCTGTATTTCCCTCTAAAAAGTTTGTCAGGAGATTGGTCAGCTCTTCTCAGGATAAGCCTTTCACTAACAAAGACAAGACAAAAAAGAGTAGCAACAAAGAAGTTGGTGGTGTGTCTGGCAAAGATGAAAGCAGTTTGAGAATATTTTGGAGCATGTTGGTGCCTAAACTGGAATATAGAAACCCATGTGACTCTTCTAGCTTCTTTCTAAAGCAGATAACCTTGCTTAAGCTGGAAAGAATACATCATGGGAATTTTTGTGTTTCTTCTCCCGATGATACCTCTAAATCTTCAAACTGTTGTATTATAATTCATAGTTTTTTCTTCAATTATTCTGTGATGCTTCCATTTTGGAGTTATGATAATTTTGATATACTCCAAATCGTAACTTTTTGCTGTGTAAAGCCTCATTTGACTCTTGAATACTATTGTTATATCGTTACATTTAATACTTTGCAAGATTCAACGACATTGAACATAAGTGATAAGTTCGATTTATTTCTGATCAAGATATATATTCTAAAGGTTTAA 3129 0.4203 MLACPSSSLHGLATLQRRSQPPHFLLSTPLFFPRFTASRKCSFRSLLSANNARRRRAVRASADSPELSESVADAGALQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVFSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTEEMEHSELDLLLAGTDSAILMIEGYSNFLPEEKLLEAVEVGQDAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIASDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGYVLNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPALLFSEVDVKLVFKEVTSKYWRKRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDTLDGVDEFKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLEQILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKGSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILGEMMNSSPPPAKRLSKYAPLIHVRPDRINLIIGSGGKKVKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYRNCEIKSIATYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEVNEKGQLRLSHRALLPDTDPDTETSPKDGIVGEKTEQSKDKSTTPKVISSSKRSSEDDSVFPSKKFVRRLVSSSQDKPFTNKDKTKKSSNKEVGGVSGKDESSLRIFWSMLVPKLEYRNPCDSSSFFLKQITLLKLERIHHGNFCVSSPDDTSKSSNCCIIIHSFFFNYSVMLPFWSYDNFDILQIVTFCCVKPHLTLEYYCYIVTFNTLQDSTTLNISDKFDLFLIKIYILKV 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0577 1042 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 59 886 - -
Aed4g0577 1042 SUPERFAMILY Ribonuclease PH domain 2-like 222 306 IPR036345 -
Aed4g0577 1042 SMART S1_6 749 820 IPR022967 -
Aed4g0577 1042 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 59 886 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aed4g0577 1042 Gene3D - 66 304 IPR027408 -
Aed4g0577 1042 SUPERFAMILY Ribosomal protein S5 domain 2-like 421 593 IPR020568 -
Aed4g0577 1042 CDD RNase_PH_PNPase_2 448 675 - -
Aed4g0577 1042 ProSiteProfiles Type-1 KH domain profile. 681 741 - -
Aed4g0577 1042 SUPERFAMILY Ribonuclease PH domain 2-like 575 677 IPR036345 -
Aed4g0577 1042 Pfam S1 RNA binding domain 758 820 IPR003029 GO:0003676
Aed4g0577 1042 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 414 821 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aed4g0577 1042 CDD PNPase_KH 686 742 - -
Aed4g0577 1042 Pfam 3' exoribonuclease family, domain 1 89 219 IPR001247 -
Aed4g0577 1042 Pfam 3' exoribonuclease family, domain 1 448 581 IPR001247 -
Aed4g0577 1042 MobiDBLite consensus disorder prediction 819 906 - -
Aed4g0577 1042 Gene3D - 751 822 IPR012340 -
Aed4g0577 1042 SUPERFAMILY Ribosomal protein S5 domain 2-like 80 219 IPR020568 -
Aed4g0577 1042 SUPERFAMILY Nucleic acid-binding proteins 744 825 IPR012340 -
Aed4g0577 1042 MobiDBLite consensus disorder prediction 822 849 - -
Aed4g0577 1042 Gene3D - 398 680 IPR027408 -
Aed4g0577 1042 CDD S1_PNPase 751 819 - -
Aed4g0577 1042 ProSiteProfiles S1 domain profile. 751 820 IPR003029 GO:0003676
Aed4g0577 1042 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 78 823 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aed4g0577 1042 Pfam 3' exoribonuclease family, domain 2 223 285 IPR015847 -
Aed4g0577 1042 Gene3D K Homology domain, type 1 681 750 IPR036612 GO:0003723
Aed4g0577 1042 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 769 IPR036612 GO:0003723
Aed4g0577 1042 CDD RNase_PH_PNPase_1 80 306 - -
Aed4g0577 1042 MobiDBLite consensus disorder prediction 887 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0577 Aed-Chr4 4833914 4864763 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0577 K00962 - gmx:100785430 1531.15