Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0557 ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTGGCCACTCCCCTCCCTCTTCTCCACCGCAACCTCTTCATCCTCTCCACCCGTTCCCTACGTTTATCTTCCTCTCCTTTTTCCTTCACTTTCTCTTCCTCACCTCTCCCATTCAAACTCAAACTCAAAGCCTCCCAATCCCAAAGTTCCTCATTCTCCTCCGCTCCTCACACCTCCTCCCCCTGGCCGGAGTGGTCCTCATTCCTCTCCCACATCTCCTCCGCCGGCTACCTCCCCTCCCTCCCCGACCAATCCTTCACCGCCCCCGCCGCCGACCACCTCTCCCACTCCTTCCTCCGCGACGCAACCGCCTGCCTCGCCTTCGCTCGCGACCGACCTAACCTTCTCAGGTTGCTTTCTACAAGAGACATTGCGGCCGTGGTTGAGCATGGCTCCCCCTTTCTCTTCCGCGACGCCCACGATTCCCTCCGGAAGATGAACTCCTTTCTCTCCAACGCCGACGCCAATGTGTTGGACACTGATAGAGCAAATACAGTTGATCTAATGAAGTTTATGCTGAGTTATGCTAGTAACCTTGGTGTCTCTTCAGAAGGGAACAGTCTCAATAAAAGAGATCTTGTTGAGTCATCTGTCAGAAATCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGACCTAATGCTTTTGATTCAGTGCAAAGTCAAATGGCTGGAAGATTTGCACAGACAAAGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTTGCAAGAAATATCAAATGTCTTGAGTGTGAGGAAGCACGGCCAAAGACAACTGGCTGGAGGTGTAATTTCTATAACTATGGGAAGAATATGGCTTGCTTAAGGTGTGATTGCAAGCAACCTGGACAAATATCTTTGGGTGCCACCAATACCTTGTCAAATATGGGGTACGAAAATGGAAACAATCCTAATACTTCAGATGTTGATGCTAGGTTAGCTGCTAATGAAGAAAAGGCACAGCGTTGGTTTAGTAAGGTCTCTCAACTAGACAGCAGTGCTGATATTAACAGTGTGGTAGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATAGATTTGTTGTGAGCACAAGAAAGACGCCACTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTCCAATAATGACATTCTCGGGATTGAGGATTCTAATGCTGGGGAGCCAATCAAGTCCCATGACAATCTGGATGATATGCTAGGTCGTTCATCTGGTCTTCCTCAATTTGACAATAAAAACTTTGTTGATGAACAAATTGCCAGTGGAGATGGCCAACCTTCATTTGCTAGCAATGCTTCACATTTTAACAATGTGAAAGGGAGCTACACTAGTACTGTTCCTCCCATTCCATTGTCTGCAGATGCACTTGCCCAAAACTCTGAGAACTTGCTAGCAGAGGAGAGCAAAAAGGTGGTATTGGATACTGATGTTGGATATGCTAGTTCAGGAGACAGTTCACAACTTTCTAATAACTCTACAAGCCAAAATATCACAGAAGATAAGGAGAAAGAGCAAGGTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCGGAGCTGAATGATTTTCCAGATATACCAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCCATGCGCAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGACCGTTCTTTGACAACACCAGCATATAAGAGACGTGCGGCCATGGAGCAATCTGGCAAGACCAACTTTGTCCCCTTTGTTCCTTTCCCCCCTGATTACTTTGCCAAAAAGGACAAGCAGCAGGGAGATGGAACAGATTCAACAGTGGCCGATGCAGCTGCTTCGACGGATAGGTCCGATGAGGATACATCTTCCATATCTGAGGTGGTGCAGAAGCCTCCAGAGATGTCAGTTGATGCTAGAGCTCAACCTGGACAGAGTCCAAAATCTTCTGAACAAAGCTCAAATAACAACAACGTTGGTTCGATGTATGGGGAAACAACCAGTGGAAGTTCAAGGCAGAGTTTCAATCAGGATCATGTTCCAAATTTGACAGGGAGTTCACCCTCAGGTCCAGCATCTGGGAACCAGAGTGTTAGAGCAGAGTGGACCGGAAAGAGTTTGGAGGGGTCAGCTGTGAAAGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCCGAGAGATGGTTCCGTCGCGTTGCACAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACATCTCAGCAGTACAGAAGAAATCTTCCAACTGTGAGCTCAGATCCAATTAAAAAAGAAAATGAAGATAGCTGA 2481 0.4615 MGGVAPRFLFLLATPLPLLHRNLFILSTRSLRLSSSPFSFTFSSSPLPFKLKLKASQSQSSSFSSAPHTSSPWPEWSSFLSHISSAGYLPSLPDQSFTAPAADHLSHSFLRDATACLAFARDRPNLLRLLSTRDIAAVVEHGSPFLFRDAHDSLRKMNSFLSNADANVLDTDRANTVDLMKFMLSYASNLGVSSEGNSLNKRDLVESSVRNLFGELFKLSYSAPGPNAFDSVQSQMAGRFAQTKPPGQKIEMKRGDWICPRCNFMNFARNIKCLECEEARPKTTGWRCNFYNYGKNMACLRCDCKQPGQISLGATNTLSNMGYENGNNPNTSDVDARLAANEEKAQRWFSKVSQLDSSADINSVVADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNNDILGIEDSNAGEPIKSHDNLDDMLGRSSGLPQFDNKNFVDEQIASGDGQPSFASNASHFNNVKGSYTSTVPPIPLSADALAQNSENLLAEESKKVVLDTDVGYASSGDSSQLSNNSTSQNITEDKEKEQGEKSERWFRKVAELNDFPDIPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRAAMEQSGKTNFVPFVPFPPDYFAKKDKQQGDGTDSTVADAAASTDRSDEDTSSISEVVQKPPEMSVDARAQPGQSPKSSEQSSNNNNVGSMYGETTSGSSRQSFNQDHVPNLTGSSPSGPASGNQSVRAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTVSSDPIKKENEDS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0557 826 MobiDBLite consensus disorder prediction 797 826 - -
Aed4g0557 826 ProSitePatterns Zinc finger RanBP2-type signature. 257 276 IPR001876 -
Aed4g0557 826 Gene3D - 246 284 - -
Aed4g0557 826 MobiDBLite consensus disorder prediction 668 729 - -
Aed4g0557 826 SMART zf_4 255 279 IPR001876 -
Aed4g0557 826 MobiDBLite consensus disorder prediction 598 748 - -
Aed4g0557 826 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 826 - -
Aed4g0557 826 Pfam Zn-finger in Ran binding protein and others 254 281 IPR001876 -
Aed4g0557 826 PANTHER ZINC FINGER PROTEIN 3 826 - -
Aed4g0557 826 MobiDBLite consensus disorder prediction 512 528 - -
Aed4g0557 826 MobiDBLite consensus disorder prediction 803 817 - -
Aed4g0557 826 ProSiteProfiles Zinc finger RanBP2 type profile. 253 282 IPR001876 -
Aed4g0557 826 MobiDBLite consensus disorder prediction 512 541 - -
Aed4g0557 826 SUPERFAMILY Ran binding protein zinc finger-like 247 283 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0557 Aed-Chr4 4617497 4622720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0557 72 312 EF-hand Containing Proteins AT1G55040 31.379 5.00e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0557 - - gmx:100792849 1333.55