Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0547 ATGGAATCGAGCATTCTGGAATGTATTGGCGTGGAGATAATCGGCGTGATGAGTCCCGTCTCGATCTGCATGTTCCTCGTGGTTCTGCTGGTGTACTCTCTCTCCTCGCCCTCCACCACCGCCGCCACCATATCCACCGCCGCCAACCTCGTCTACGACGAGAACCCATCCGACACGACGGCGCAGAAGCTCGAGGGCGCGGTCCTGAACGCCGTGGTCTTCGTCGTCCTCGTCGCTCTCGTCACGTTCCTCCTCGTCCTCCTCTACTACTACAACTGCACCGGGTTCCTCCGCCACTACACGCGCTTCTCCGCCTTCTTCGTCCTCGCCACCATGGGCGGATCCATCCTCCTCTCCCTCCTCCAGCGCTTCTCCATCCCCCTTGACGCCTTCACCGCCTTCCTCCTCCTCCTCAACTTCACCGTCGTCGGCGTCCTCTCCGTCTTCTCCGGCGGCGTCCCGATCCTCCTCCGCCAGTGCTACATGGTCTGCCTTGGCATCATCGTCGCCGCCTGGTTCACCAAGCTCCCCGAGTGGACCACCTGGACGCTCCTCGTCGCCCTCGCGCTCTACGATCTGGCCGCCGTCCTCGCCCCCGGCGGCCCGCTCAAGCTCCTTGTCGAATTGGCGTCCAGCCGGAACGAAGACCTCCCGGCGCTTGTCTACGAGGCGCGTCCCACGGTCCCCCCCGCCGCCCGAAACAGCCACCACGCCGCGGCAATAGGGCTCATCGTCGCCGCCGGGGTTCCGGATTCGGAAGCTTCTAGAATTGAGCTTCAGGTAGTTTCTAGGAATAATATGATTAGTAACAATGCTAATGATAGTAATGAAAATGAAGGAAGTGATCGGATTAATGATGTAGGAGAAAGATCACCTTTGGTTGGTGGAATGAGATTTGGTGATGCTGTTGTTAATGAGGAAATGTCACCACTTGTTGAGATGAGTAGTGGGGTTGAGGAAAATGAAGAAGAGGTGAGGAGGGAGTTTGGTGAAAGAGGGATTAAGCTTGGACTTGGTGACTTTGTTTTCTACAGTGTTCTTGTGGGGAGAGCGGCTATGTATGATTTGATGACCGTGTACGCTTGCTACCTTGCCATTATTTCCGGCCTGGGCTGCACCCTCATTTTGCTGTCCGTGTGCCGGCAGGCTCTGCCCGCCCTTCCGATTTCCATTGCCTTGGGGGTTCTGTTCTATTTCTTGACAAGGCTGCTCATGGAGCCTTTCATTGTCGGGACCGCCACCAATTTGATGATGTTTTGA 1260 0.569 MESSILECIGVEIIGVMSPVSICMFLVVLLVYSLSSPSTTAATISTAANLVYDENPSDTTAQKLEGAVLNAVVFVVLVALVTFLLVLLYYYNCTGFLRHYTRFSAFFVLATMGGSILLSLLQRFSIPLDAFTAFLLLLNFTVVGVLSVFSGGVPILLRQCYMVCLGIIVAAWFTKLPEWTTWTLLVALALYDLAAVLAPGGPLKLLVELASSRNEDLPALVYEARPTVPPAARNSHHAAAIGLIVAAGVPDSEASRIELQVVSRNNMISNNANDSNENEGSDRINDVGERSPLVGGMRFGDAVVNEEMSPLVEMSSGVEENEEEVRREFGERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRQALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0547 419 Gene3D Presenilin 313 410 IPR042524 -
Aed4g0547 419 MobiDBLite consensus disorder prediction 268 287 - -
Aed4g0547 419 PANTHER PRESENILIN 1 419 - -
Aed4g0547 419 SMART psh_8 65 405 IPR006639 GO:0004190|GO:0016021
Aed4g0547 419 Pfam Presenilin 11 409 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aed4g0547 419 PANTHER PRESENILIN 1 419 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aed4g0547 419 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aed4g0547 419 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016021|GO:0016485
Aed4g0547 419 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016021|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0547 Aed-Chr4 4550394 4551653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0547 1 419 Miscellaneous Gene Families AT1G08700 61.790 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0547 K04505 - gmx:100819461 548.895