Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0546 ATGAACACTAAGAGCAGGTTGATGATCACCCTTTGGTTTGTGCTCTATATGTGTTCCATCATCACAAACTCACTAGCACTAGCAGCTTCTTCTTCTTCTTCTTCAAAGCAGTGCCATTTCCCTGCAGTCTTCAACTTTGGTGACTCAAATTCAGACACAGGAGGCCTCTCTGCTGCCTTTGGACAACCTGGCCCTCCTCAGGGAATGTCCTTCTTCCATCACCCTGCTGGCCGTTACTGTGATGGCCGTCTCATTGTTGATTTCATTGCCAAGAAGCTGGGCCTGCCTTATTTGAGTGCATTTCTTGATTCTGTTGGGTCAAATTATAGCCATGGAGCCAACTTTGCAACTGCTGGATCCACCATTAGACCTCAGAACACAACCCTTCATCAGACTGGTGGTTTCAGCCCTTTTTCTTTGGATGTTCAATTCAACCAATTCAGTGATTTCCAACGCAGGACACAGTTTTTTCGCAACAACAAAGGTGGAGTGTATAAAACAATGTTACCAAAAGCAGAAGATTTTTCTCAAGCCTTATACACGTTTGATATTGGTCAAAATGACTTGACATCTGGTTACTTCCACAACATGTCCACGGATCAAGTTAAAGCATATGTTCCAGATGTTATAGCTCAATTCAAGAACATAATCAAGTATGTATACAATCATGGAGGAAGATCATTTTGGGTTCACAACACGGGTCCTGTTGGTTGTGTGCCATACATCTTAGATCTTCACCCAGTAAAACCATCCTTATTGGACAAAGCAGGATGTGCAACCCCTTATAACGAAGTGGCCAAGTTCTTCAATAGTAAATTGAAAGAAGTTGTGGTTCAACTCAGAAAAGAGCTTCATTTGGCTGCTATCACTTATGTTGATATCAAGGTTCATGGAAAGGAGATTCTGGTGGGGAAGGCATGCAAGGATCCATCAGTTTGGGTTAATTGGGATGGTGTGCATTTCACTCAGGCTGCTAACCAATGGGTGTTTGATCAGATTGTTGATGGTTCATTTTCTGATCCACCTATTCCTTTGAACATGGCTTGTCATAAGCATCTTTAA 1062 0.4237 MNTKSRLMITLWFVLYMCSIITNSLALAASSSSSSKQCHFPAVFNFGDSNSDTGGLSAAFGQPGPPQGMSFFHHPAGRYCDGRLIVDFIAKKLGLPYLSAFLDSVGSNYSHGANFATAGSTIRPQNTTLHQTGGFSPFSLDVQFNQFSDFQRRTQFFRNNKGGVYKTMLPKAEDFSQALYTFDIGQNDLTSGYFHNMSTDQVKAYVPDVIAQFKNIIKYVYNHGGRSFWVHNTGPVGCVPYILDLHPVKPSLLDKAGCATPYNEVAKFFNSKLKEVVVQLRKELHLAAITYVDIKVHGKEILVGKACKDPSVWVNWDGVHFTQAANQWVFDQIVDGSFSDPPIPLNMACHKHL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0546 353 SUPERFAMILY SGNH hydrolase 43 335 - -
Aed4g0546 353 CDD SGNH_plant_lipase_like 41 337 IPR035669 -
Aed4g0546 353 Gene3D SGNH hydrolase 28 337 IPR036514 -
Aed4g0546 353 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 37 302 - -
Aed4g0546 353 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 304 351 - -
Aed4g0546 353 Pfam GDSL-like Lipase/Acylhydrolase 43 333 IPR001087 GO:0016788
Aed4g0546 353 PANTHER BNAA06G32900D PROTEIN 37 302 - -
Aed4g0546 353 PANTHER BNAA06G32900D PROTEIN 304 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0546 Aed-Chr4 4544183 4548290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0546 41 352 Acyl Lipid Metabolism Gene Families AT4G10950 28.090 9.56e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0546 - - gmx:100819985 638.262