Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0544 ATGGCCACTGTTCTCAGAACCCCCACTTTCCGGCCACCGCCTCCGCCGCGCGCCGCCAAGTCGGCAAAGCCCTCGCGCGTGGCCGTCGCGTCGTTCAGACAGAGCACCACCTGCAGGAGAAAGCCCTCGCTCCTCTCCTCCCTGCGGTTCCCCACCGTTCCCTCTCTACGGTTCGTCAGGTTCGTCCCCTTCGCTTTCGGCGGCGACACCGAGGCCCCGCAAGTTCAGGAACCGGAGGTTCAGGTTCTGGACCCTTCAGATGGCACTATTGGTGTAAACGACAGTGCAAGTGATAATGAGGTTGGTGATGCTGATGAAACATTTGCTTCACCTTTCATGCTGTTACTTCAATCATACAAGGAAGCATTGGCTAATAGTGACGAAGTCAAAATTGCTGAGTTGGAATCATCATTAAAATCCATTGAAGATGAGAAAATAGAACTTGAAGGGAGAATAGCTTCTTTATCGGAAGAGTTATCAATAGAAAAGGACCGGATACTACGGATTAGTGCAGACTTTGACAATTTTCGGAAGAGGACAGAGAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGTGAAGTTGTGGAGAGTTTGTTGTCTGTATTGGATAATTTTGAGAGAGCAAAAACCCAGATTAAGGTGGAGACAGAGGGAGAGCAGAAAATTAACAACAGCTATCAGAGCATATATAAACAGTTCCTTGAAATTCTAACTTCACTCAAAGTTGAACCTGTGGAGACAGTTGGAACACCCTTTGATCCATTGCTACACGAAGCAATTATGCGTGAGGATTCTGATGAATTTGAGGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTCAAACTTGGTGACCGTCTCTTGCGTCCATCAATGGTGAAGGTATCCGCTGGTCCTGGACCTGCAAAGCCTGAACAAGAAGCACCTCAAGAAGAACAAGTCAACACTGAAATTTCTGATGACAGTAAAGAAAACGAGGGCAGCACAGAAACAGAGTCTGCTTGA 1008 0.4752 MATVLRTPTFRPPPPPRAAKSAKPSRVAVASFRQSTTCRRKPSLLSSLRFPTVPSLRFVRFVPFAFGGDTEAPQVQEPEVQVLDPSDGTIGVNDSASDNEVGDADETFASPFMLLLQSYKEALANSDEVKIAELESSLKSIEDEKIELEGRIASLSEELSIEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLSVLDNFERAKTQIKVETEGEQKINNSYQSIYKQFLEILTSLKVEPVETVGTPFDPLLHEAIMREDSDEFEDGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQVNTEISDDSKENEGSTETESA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0544 335 Coils Coil 124 165 - -
Aed4g0544 335 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 Pfam GrpE 137 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 PANTHER GRPE PROTEIN 5 314 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 MobiDBLite consensus disorder prediction 317 335 - -
Aed4g0544 335 Gene3D Head domain of nucleotide exchange factor GrpE 243 297 IPR009012 GO:0006457
Aed4g0544 335 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 147 239 IPR013805 -
Aed4g0544 335 MobiDBLite consensus disorder prediction 293 335 - -
Aed4g0544 335 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 Hamap Protein GrpE [grpE]. 97 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 MobiDBLite consensus disorder prediction 1 26 - -
Aed4g0544 335 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Aed4g0544 335 Gene3D - 125 240 IPR013805 -
Aed4g0544 335 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed4g0544 335 PANTHER GRPE PROTEIN HOMOLOG 5 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0544 Aed-Chr4 4526726 4531580 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0544 K03687 - gmx:100820521 559.681