Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0539 ATGTGGGCTCTTCGTCGAGCTTCGATTCCTCTCAGTCTCAGGACCCGAGGGTTTAATGTGAGAGCTTCTCGTGTCAAATTAGCGGGAACTAGTTGTGTTGAAGAAGAGAGTATTACAAATTACTATGGTGGATTTTTGTTGTCCAAGACGCTTTTCCATTCAGGGCACAATGCTTCCCTGAATTTGACTGTGGGGAAACGTGCACTCTCTTCGAATAGCACGAAAGAGGATGATAATTTGGAGGATGGGTTCTCCGAGCTCGATGAAAGTGATGGAGATGAAAGTGACGATCTGTTAACCTCCAATGAGGTCGATGAGGTGGCCAAGGAGGGAAGAAAGCCGTGGCACCGTGGACGGGCTAAATCGGATCTCTTCAATGAGATACAGAATGTGCCGGAAAATGTGTCGGACTCTTTCATGTATTTGGCTCTGGAAAAGTGGTTAGAAGGAGGGAATGAGCTAACCAGAGAGGAGGTCTCACTTGCCATGTGTAATCTTCGGAAGCTTAAGATGTATAAGAGAGCTTTGCTGTTTTCAGAATGGCTCGAGTCAAGAAAGGAGTTTGAGTTTATAGAAAGAGATTATGCAACTCGACTTGATTTAATTGCCAAACAGTGTGGCTTACATGAAGCAGAGGCTTACATTGAGACAATTCCAGAATCTTGTAGTAGAGAGATAATGTACCGGACTTTACTGGCTAACTATGTCAGTCAGAACAATGTGAAGAAAGCAGAGCAACTTTATAGTAAAATGGAGGCCTTAGATTGTCCTGTTACAGTGTTTACTTGCAATCAGTTGCTACTTCTATATAAGAGGAATGATAAGATGAAAATAGCCGATGTGTTACTGATTATGGAAAACAAGAATATCGAACCTTCATCTCTCACTTATTCAATCTTAATAGACACAAAGGGCCTGTCTAAAGATATTGACGGAATGGATCAAATTGTTGATAAAATGAAGACTCAAGGCATTGAACCAGACATCAACACACAGGCTGTTTTGGTTAAGCATTACATCTCAGCTGGGCTTCAAGATAAAGCTCAAACATTATTGAAAGAGATGGAAGGTGAAAACTTAAAACGGAATCGGTGGCTATGCCGAATTTTGTTTCCTCTCTATGCAAACTTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGGAGGTCTGTGAGACAAACCCTCGGTATGACGAGTGTTTGGGGGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGAAGAAGCTGAGAAAGTCTTTGAGATGATGGTAAAGAAATGGAAGCTTTCTTCCAATAGCTATTCCAAACTGCTGAATGTTTATGCAAATAATAAGATGCATATGAAGAGTAAGGATCTTCTTAGGCGAATGAGAGATAGTGGGTGCCAAATAGGCTCGTTGACCTTGGATGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCAGACTCTGTTCTTCATAAGGCTGCTGTCAAACAGAGCTCGATGAAGCCAAGGTTTTCATCCTACCTCACTATTTTGGAGCAATATGCTAACAAAGGTGACATCCATAATGCAGAGAAAATTTTCCTTAGAATGAAACAAGCTAAGTATCCAACTAGAGCAAAGGTGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCTTATGGAATTAGAGACAGGTTGAAGGCTGATAGCATATATACCAATTTTACTTTGTCAAACCAGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTTTGATTTGCTTGATTGA 1779 0.4087 MWALRRASIPLSLRTRGFNVRASRVKLAGTSCVEEESITNYYGGFLLSKTLFHSGHNASLNLTVGKRALSSNSTKEDDNLEDGFSELDESDGDESDDLLTSNEVDEVAKEGRKPWHRGRAKSDLFNEIQNVPENVSDSFMYLALEKWLEGGNELTREEVSLAMCNLRKLKMYKRALLFSEWLESRKEFEFIERDYATRLDLIAKQCGLHEAEAYIETIPESCSREIMYRTLLANYVSQNNVKKAEQLYSKMEALDCPVTVFTCNQLLLLYKRNDKMKIADVLLIMENKNIEPSSLTYSILIDTKGLSKDIDGMDQIVDKMKTQGIEPDINTQAVLVKHYISAGLQDKAQTLLKEMEGENLKRNRWLCRILFPLYANLGKVDEVGRIWEVCETNPRYDECLGAIEAWGKLNKIEEAEKVFEMMVKKWKLSSNSYSKLLNVYANNKMHMKSKDLLRRMRDSGCQIGSLTLDAIVKLYVQAGEVEKADSVLHKAAVKQSSMKPRFSSYLTILEQYANKGDIHNAEKIFLRMKQAKYPTRAKVYQVLMNAYINAKVPAYGIRDRLKADSIYTNFTLSNQLVQVDGFRKNPVFDLLD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0539 592 Pfam PPR repeat 403 425 IPR002885 -
Aed4g0539 592 Pfam PPR repeat 432 461 IPR002885 -
Aed4g0539 592 PANTHER OS01G0280400 PROTEIN 34 592 - -
Aed4g0539 592 MobiDBLite consensus disorder prediction 81 101 - -
Aed4g0539 592 Gene3D Tetratricopeptide repeat domain 280 398 IPR011990 GO:0005515
Aed4g0539 592 Gene3D Tetratricopeptide repeat domain 399 495 IPR011990 GO:0005515
Aed4g0539 592 Gene3D Tetratricopeptide repeat domain 496 585 IPR011990 GO:0005515
Aed4g0539 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Aed4g0539 592 MobiDBLite consensus disorder prediction 71 103 - -
Aed4g0539 592 TIGRFAM PPR: pentatricopeptide repeat domain 227 259 IPR002885 -
Aed4g0539 592 TIGRFAM PPR: pentatricopeptide repeat domain 432 462 IPR002885 -
Aed4g0539 592 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Aed4g0539 592 Pfam Pentatricopeptide repeat domain 494 547 IPR002885 -
Aed4g0539 592 Pfam Pentatricopeptide repeat domain 247 303 IPR002885 -
Aed4g0539 592 Pfam Pentatricopeptide repeat domain 316 361 IPR002885 -
Aed4g0539 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Aed4g0539 592 PANTHER OS12G0527900 PROTEIN 34 592 - -
Aed4g0539 592 Gene3D Tetratricopeptide repeat domain 136 279 IPR011990 GO:0005515
Aed4g0539 592 SUPERFAMILY TPR-like 399 547 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0539 Aed-Chr4 4465143 4469564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0539 335 591 EF-hand Containing Proteins AT1G02150 21.805 3.85e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0539 - - gmx:100500196 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0539 4 4465143 4469564 Aed4g0539 4 4465143 4469564 ECH