Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0537 CGTGACAATATTCCTACCGATTTGCATCCAGTTACCAATAAATCTGCCTTGGAGACAGTGTTGACGCTAACAATCACGCTTCAGAAAGAAGACAATGATCCAGAAAAAGTTCAATATAATGAATATTTCTATGCCGGGGGATTGGTTGAATATGTGGAATGGCTTAACACTGATAAGAAAGCTCTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGATGGCATCACAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGATACTATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACTCATATCGATGCTATGAAGGCTTCTATAACAAGAACTCTGAATAGTCTTGGAAAGAAGTCAAAAGTTATTAAGGAGAAGGATATTACTCTAAGTGGCGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCTGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTGGTCGATCAATCTATTCAAGACTATCTTACCGAGTATTTAGAATTGCATCCAGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTTAAGGCAGCTTTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTCTTGAGGTCTTCGTCTCTTCCAGGAAAACTAGCTGATTGTTCATCTGCAAATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCCCTGAGGGGTAAGATTCTGAATATTGAAAGGAGAGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGGTCTTGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCATAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCCCACATCCGAACTCTGTTACTGACATTTTTCTTCAGATACCAGAGAGCTTTGTTCGATGAAGGTTGCATATATGTTGGTGTTCCACCATTATACAAGGTTGTAAGGGGAAAACAAATGCACTATTGCTATGATGATGCTGACCTTAAAAAGCTTAAAAGATCATTCCCTCCTAATGCATCATACAACATGCAGAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAGCGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCCTCTCTTATGGGTGCTCGGGTGGATTTTCGGAAGGAACTCATACGGAATTCGGCAAGTATGATTGATCTTGATCAGCTAGATATTTGA 1392 0.4001 RDNIPTDLHPVTNKSALETVLTLTITLQKEDNDPEKVQYNEYFYAGGLVEYVEWLNTDKKALHDVLSFRKETDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQDYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSANPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQMHYCYDDADLKKLKRSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGARVDFRKELIRNSASMIDLDQLDI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0537 463 ProSiteProfiles Toprim domain profile. 244 351 IPR006171 -
Aed4g0537 463 PANTHER DNA GYRASE SUBUNIT B 3 22 - -
Aed4g0537 463 PANTHER DNA GYRASE SUBUNIT B 23 463 - -
Aed4g0537 463 ProSitePatterns DNA topoisomerase II signature. 248 256 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 Gene3D - 45 224 IPR014721 -
Aed4g0537 463 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 3 22 - -
Aed4g0537 463 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 23 463 - -
Aed4g0537 463 SUPERFAMILY Ribosomal protein S5 domain 2-like 47 217 IPR020568 -
Aed4g0537 463 SUPERFAMILY Type II DNA topoisomerase 221 454 IPR013760 GO:0003918|GO:0005524
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 296 305 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 186 200 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 414 426 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 46 68 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 200 220 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 430 446 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA gyrase subunit B signature 138 154 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 Pfam DNA gyrase B subunit, carboxyl terminus 389 449 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 SMART topII5 1 454 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 CDD TOPRIM_TopoIIA_GyrB 244 358 IPR034160 -
Aed4g0537 463 Gene3D - 225 463 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 393 409 - -
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 246 260 - -
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 94 107 - -
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 313 329 - -
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 351 363 - -
Aed4g0537 463 PRINTS DNA topoisomerase II family signature 331 348 - -
Aed4g0537 463 CDD TopoII_Trans_DNA_gyrase 46 200 - -
Aed4g0537 463 Pfam DNA gyrase B 47 216 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aed4g0537 463 Pfam Toprim domain 245 346 IPR006171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0537 Aed-Chr4 4434775 4456082 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0537 K02470 - gmx:100807172 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0537 4 4434775 4456082 Aed4g0537 4 4434775 4456082 ECH