Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0478 GTAAGCTGGGATCGAAGAAAAGAACATCATGAGCATGAGCACGAGCATAAGCTAGCTTCGTGTTGGTGCTGTTCTGTCTCAAATGTTTATGAAGTCGTAAATGCTGCCACACGCCTCTGTTATCTCGTAAAAATGAGTCTTTTGCCTCGTCTTCATATCTTCGCTAGGCCTTTACTCTGCTCCTCTCTTCTCTCCCCCTTCTCTCAGAATGGAGGTAGAGAAATAATGACCAGGATTGGCAGGAATGCCTGCTCTCTTTCTTCTGCAGCTGAAGCTCCAGACTTAGAATATGATTTCATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCACAGCTTGCTAGTGAGTTTAGCAAGGAATCTATGCTATCTCTGCGGAAGTTTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGATCTAGCTCTGGGAATTGGAGGATTACCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCACTTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGATTTCTCACTTATGGAATCAATGGGTGTAAATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTGAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTGGATGTAATTGTGATTGATAGTGTTGCTGCCCTCATCCCCAAATGCGAACTTGATCAACTAGGAGTTACCACTAATCGAGATTTACAATCGCGTATGATGACTCAAGCATTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCATTGTTTTCATTAATCAGGTTGAGGCCTTATTACTTGAACGTTCGTGCACCTTGTACTTTGAATGTCAATTAATTAGATTGAGTCCAAAATCAGCCAAGGAATTTGGATCTGCAGAAGAAGTCACTTGTGGAGGAAATGCCTTGAGATTCTATGCCGCTGTTCGTTTGAGACTTTCAAGAATGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATATGTGCACAAGTGGTGAAAAATAAACTCGCACCAGCATCAACGAAAAGGGCTGAACTGGGCATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCCTGTGATCATGGAATCATTGTTAAAGATGAGGGAAGCTACTTTATTGAAGGGAGAAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGATGCAGTTTGTGACAAGTTGGTTGGGGATATGAGAAGACTTCATTTTTAA 1362 0.4097 VSWDRRKEHHEHEHEHKLASCWCCSVSNVYEVVNAATRLCYLVKMSLLPRLHIFARPLLCSSLLSPFSQNGGREIMTRIGRNACSLSSAAEAPDLEYDFIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLRKFFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLMESMGVNTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVTTNRDLQSRMMTQALRKIHYSLSHSQTLIVFINQVEALLLERSCTLYFECQLIRLSPKSAKEFGSAEEVTCGGNALRFYAAVRLRLSRMRLIKTEDKVEGVLICAQVVKNKLAPASTKRAELGIKFGRGFCHESDVLDLACDHGIIVKDEGSYFIEGRSFDSREAAELFLAQNDAVCDKLVGDMRRLHF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0478 453 PANTHER RECA 304 453 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 382 IPR027417 -
Aed4g0478 453 ProSiteProfiles RecA family profile 2. 327 399 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aed4g0478 453 ProSiteProfiles RecA family profile 1. 140 299 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aed4g0478 453 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 46 307 - -
Aed4g0478 453 ProSitePatterns recA signature. 339 347 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aed4g0478 453 Gene3D - 139 449 IPR027417 -
Aed4g0478 453 PANTHER RECA 46 307 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 336 364 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 370 399 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 198 227 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 270 299 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 232 261 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PRINTS RecA protein signature 423 440 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 304 453 - -
Aed4g0478 453 Pfam recA bacterial DNA recombination protein 112 394 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aed4g0478 453 SMART AAA_5 162 322 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0478 Aed-Chr4 3667243 3671577 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0478 - - gmx:100777423 665.996