Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0454 ATGTCTCATCTCCGCAAACGCGGTTTATCCTCATTCCTCAACTCACTCACTCACTCTTCCAACCAAGCTCACTCTTTGATGGCCAGCACCGCAACTCACTATCTCCAACTCGCCAGCACCACCGAGTCGACTCGCCATCGGAGAATCTCCATTTCATGCAACAAGAAATCCAACAAGTTAGCATTCAAGGAAACGAAGGAAGGCTTCGTGGACTACGACCGAGGCCAGCACGAGGTCTCCACGAGAATCTCCGGCATCCGCAAGGATGACATCGCCGCCCGCTACCGCCTCCGCGTCGCCGGAAACCGATTCCAGAAGGACTGGACGGTGTCGGAGGTCGCCGACCTCGTCCTCTCCCTTGACCTCTCCGACGACGTCGACGGCCTGCTCAACCGCTGGGTTGGCCGCTTCGCACGCAAGAATTTCCCCTTCCTCATTAAGGAGTTGACGCAGAGAGGGTCCATTGAACACTGTAACCTCGTGTTCCGGTGGATGAAGAACCAGAAGAACTACTGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCCAGGCATAATCGAACGGACAAGGCGCTGGCGTTGGGCTATGAATATCATGGAGGATATGTTGCGTGCAGCTGTATTCCACCAAGTCGGACAACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGAGAATGGTGTTGGACCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGAGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACCACACTTAATATTGTTATCCATTGTCTAGTAAAGCTTAGACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAGTCGGAATGTACCCCTGATGTTGTTACATTCACTAGTATCATCCACTTGTATTCTGTGTGTGGGCACGTTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCAGAAGGGCTGAAACCTAATATAGTCTCGTATAATGCATTAATTGGTGCGTATGCTGCTCATGGAATGGGCAATGAGGCACATTTGGTTTTCAATGAGATAAAACAAAATGGTTTCTGCCCTGATATTGTATCTTATACATCTCTTCTTAATGCTTATGGAAGGTCACAAAAGCCCCAAAAAGCAAGAGAAATGTTTGATAGGATGAAGAGAAACAAGTTGAAGCCAAATATTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATATTGCGAGAAATGGAACAAGAAGGAATTCATCCAAATGTTGTCTCAATATGCACACTCCTGGCTGCCTGTGGACGATGCAGTCGGAAGGTGAAAATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAATACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCCATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGTTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAATCTTCCTTTGTCCAAAGAGGTCTACTCATCTGTCATATGTGCCTATAGCAAACAAGGCCAAATTGTAGAAGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCACCATGCTTGATGCGTATAATGCAGCTGAGAATTGGGAGAAAGCTTATACACTCTTTGAAGAAATGGAATTAAGCGGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGTCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATCCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTGCATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTCCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGTCATCAGGTGCTGATGTTAACCTGAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGATGCAGGAATTCATCCATCAAATGCAATGTACCATGATATATCCTCCTTTTCACAAAAATGCTGTGGGGATGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAATTCCAGGGATCAAATTTCCACAATCCAACCTTGCAAATCTCCTGTTCTTAGTTGA 2481 0.4172 MSHLRKRGLSSFLNSLTHSSNQAHSLMASTATHYLQLASTTESTRHRRISISCNKKSNKLAFKETKEGFVDYDRGQHEVSTRISGIRKDDIAARYRLRVAGNRFQKDWTVSEVADLVLSLDLSDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNLVFRWMKNQKNYCARNDIYNMMIRLHARHNRTDKALALGYEYHGGYVACSCIPPSRTTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSECTPDVVTFTSIIHLYSVCGHVENCEAAFNMMLAEGLKPNIVSYNALIGAYAAHGMGNEAHLVFNEIKQNGFCPDIVSYTSLLNAYGRSQKPQKAREMFDRMKRNKLKPNIVSYNALIDAYGSNGLLADAIKILREMEQEGIHPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYVEALSFMEEMMHLNLPLSKEVYSSVICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTTMLDAYNAAENWEKAYTLFEEMELSGIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKCIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLSSGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNAMYHDISSFSQKCCGDENAAVIKERLESLKRNSRDQISTIQPCKSPVLS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0454 826 Pfam PPR repeat 287 314 IPR002885 -
Aed4g0454 826 Pfam PPR repeat 177 197 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Aed4g0454 826 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 49 784 - -
Aed4g0454 826 Pfam Pentatricopeptide repeat domain 379 440 IPR002885 -
Aed4g0454 826 Pfam Pentatricopeptide repeat domain 320 367 IPR002885 -
Aed4g0454 826 Pfam Pentatricopeptide repeat domain 729 780 IPR002885 -
Aed4g0454 826 Pfam Pentatricopeptide repeat domain 443 473 IPR002885 -
Aed4g0454 826 SUPERFAMILY TPR-like 283 651 IPR011990 GO:0005515
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 533 562 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 287 318 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 217 249 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 569 602 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 428 462 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 498 531 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 711 737 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 358 392 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 603 637 IPR002885 -
Aed4g0454 826 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 482 590 IPR011990 GO:0005515
Aed4g0454 826 Pfam PPR repeat family 496 544 IPR002885 -
Aed4g0454 826 Pfam PPR repeat family 569 612 IPR002885 -
Aed4g0454 826 Pfam PPR repeat family 215 260 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Aed4g0454 826 PANTHER OS07G0213300 PROTEIN 49 784 - -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Aed4g0454 826 SUPERFAMILY TPR-like 183 349 IPR011990 GO:0005515
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 599 670 IPR011990 GO:0005515
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 375 481 IPR011990 GO:0005515
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 263 374 IPR011990 GO:0005515
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 110 262 IPR011990 GO:0005515
Aed4g0454 826 Gene3D Tetratricopeptide repeat domain 675 801 IPR011990 GO:0005515
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Aed4g0454 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0454 229 784 Glycosyltransferase AT1G05670 24.329 3.91e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0454 - - gmx:100814643 1425.61