Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0434 ATGCTTGAAGCGCAGAGCGATTGTAGAGACATTTGCAAGGTGCTGGTGTGGTTGACACACACAAGGTCACTCCGGAAGGGTCTCCAACTCCATGGCCACGTCATCAAATCGGGGCTCGAAGCTATTCCATTGGTGTGCCACCACTTGATCAACTTCTACTCCAAAACCAACCTTCCTCACTCCTCGCTCCAACTCTTCGATTCATTTCCGCACAAATCCGCCACCACATGGAGCTCCGTGATCTCCTCCTTCGCGCAGAACGACCTACCCCTCCCCGCGCTCCGCTTCTTCCGCCGCATGCTCCGCCACGGCCTCCGCCCCGACGACCACACGCTCCCCACCGCCGCGAAGTCCGTCGCCGCCCTCTCGTCCCTCCCCCTCGCACACTCCCTCCACGCCCTCGCCCTCAAGACCGCCCACCACCACGACGTCTTCGTGGGAAGCTCCCTCGTCGACACGTACGCCAAATGCGGCGACGTAGGCCACGCGCGCAAGGTGTTCGACGAAATGCCTCATAAAAACGTCGTCTCCTGGAGCGGCATGATATACGGGTACTCCCAGATGGGTCTCGATGAGGAGGCTTTGAACCTCTTTAAACTCGCTCTGGAGCAGGATTGTGATATTCGGGTTAATGATTTCACGCTTTCTAGTGTTCTGCGGGTGTGTGGTGCTTCCACGTTGTTTGAGTTGGGGAAGCAGGTGCATGGACTCTGCTTTAAGGCGAGTTTTGACTCGTCCTGCTTTGTGGCCAGCTCGTTGATCTCGTTGTACTCTAAATGCGGGGTTGTGGAAGGAGGTTACAAGGTTTTTGAGGAGGTGAAAGTTAGGAACCTTGGCATGTGGAATGCAATGTTGATTGCGTGTGCTCAGCATGCACACACGGGGAGAACTTTTGAGCTGTTTGAAGAGATGGGGAGTGTTGGGGTGAAGCCCAATTTCATCACTTTTTTGTGTCTGTTATATGCGTGCAGCCATGGAGGGTTGGTGGAGAAGGGGGAACACTACTTTGAGTTGATGAAGGAGCATGGTATTGAACCGGGGTCACAGCATTATGCTACGTTGGTGGATTTGCTCGGTCGTGCTGGGAAGCTGGAGGAAGCGGTTCAGGTGATCGAGGAAATGCCAATGCAGCCCACTGAATCTGTGTGGGGGGCTTTGTTGACAGGGTGTAGGATTCATGGGAACACTGAATTGGCTTCCTTTGTGGCTGATAAGGTTTTAGAGATGGGTGCTGTGAGCTCTGGGATTCAGGTTTTGCTGTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAAGCGGCAAGGGCAAGGAAGAAGATGCGGGATCAAGGAATAAAGAAGGAAACTGGGTTGAGTTGGGTGGAGGAGGGGAACAGGGTTCATACATTTGCTGCTGGGGATAGGTCTCATGGGAAAACCAGGGAAATTTATGAGAAGTTGGAGGAGTTGGGAGAGGAAATGGAGAAAGTTGGTTATGTTGCAGACACTTCTTTTGTGTTGAAAGAAGTGGATGGGGATGAGAAGAGTCAAACTATAAGGTATCATAGTGAAAGGTTGGCCATAGCGTTTGGACTTATTACTTTCCCTCAGGATCGGCCTATCAGGGTAATGAAGAACTTACGAGTTTGTGGTGATTGCCACACTGCCATCAAGTTTATTAGCAAGTGTACTGGAAGGGTGATTGTTGTGAGAGACAATAACCGGTTCCACCAATTTGAGGATGGGAAATGCACTTGTGGAGATTATTGGTGA 1752 0.5183 MLEAQSDCRDICKVLVWLTHTRSLRKGLQLHGHVIKSGLEAIPLVCHHLINFYSKTNLPHSSLQLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLRPDDHTLPTAAKSVAALSSLPLAHSLHALALKTAHHHDVFVGSSLVDTYAKCGDVGHARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKLALEQDCDIRVNDFTLSSVLRVCGASTLFELGKQVHGLCFKASFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMGSVGVKPNFITFLCLLYACSHGGLVEKGEHYFELMKEHGIEPGSQHYATLVDLLGRAGKLEEAVQVIEEMPMQPTESVWGALLTGCRIHGNTELASFVADKVLEMGAVSSGIQVLLSNAYAAAGRWEEAARARKKMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMEKVGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPQDRPIRVMKNLRVCGDCHTAIKFISKCTGRVIVVRDNNRFHQFEDGKCTCGDYW 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0434 583 PANTHER OS01G0913400 PROTEIN-RELATED 8 527 - -
Aed4g0434 583 Pfam Pentatricopeptide repeat domain 277 323 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 351 374 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 76 108 IPR002885 -
Aed4g0434 583 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Aed4g0434 583 Pfam E+ motif 460 487 IPR046849 -
Aed4g0434 583 Gene3D Tetratricopeptide repeat domain 122 233 IPR011990 GO:0005515
Aed4g0434 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Aed4g0434 583 Gene3D Tetratricopeptide repeat domain 4 121 IPR011990 GO:0005515
Aed4g0434 583 Gene3D Tetratricopeptide repeat domain 248 512 IPR011990 GO:0005515
Aed4g0434 583 Pfam E motif 393 455 IPR046848 -
Aed4g0434 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Aed4g0434 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Aed4g0434 583 Pfam DYW family of nucleic acid deaminases 491 583 IPR032867 GO:0008270
Aed4g0434 583 Pfam PPR repeat 148 174 IPR002885 -
Aed4g0434 583 Pfam PPR repeat 76 105 IPR002885 -
Aed4g0434 583 Pfam PPR repeat 176 203 IPR002885 -
Aed4g0434 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Aed4g0434 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Aed4g0434 583 PANTHER BNAA10G28390D PROTEIN 8 527 - -
Aed4g0434 583 Pfam PPR repeat 343 374 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0434 Aed-Chr4 3112433 3114184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0434 5 583 Glycoside Hydrolase AT3G49170 36.503 7.72e-127 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0434 - - gmx:100800235 1057.36