Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0414 ATGGACAAGAAGCCACTACTCTTCCTATTATTTTTCCTTCTCACCCGATCTCTTCTCGCCACGTCACACCCTCTAAACCCAATCCCACTAACGCTCTCCGTCGTAGACTTTGGCGCCACCGGCGACGGCCTCCGCTACGACACGGCAGAAATCCAGTCGGCCATCAACTCCTGCCCGGCGGGGTGTCCCTGCCACGTCACCTTCCCGGCGCCGGGAAAATACCTGACGGCCACCGTCTTCTTGAAATCCGGCGTGGTGCTGAACGTGGAGGCCGGGGCCACCATCCTGGGCGGCACGAGGCTGGAGGACTACCCGGAGGAGTCGTGGCGGTGGTACGTGGTCGTGGCGGAGAACGCGACGGACGTCGGAATCCGCGGCGGCGGAGTGGTGGACGGGCAGGCTGCGAAATTTGTAGTGAGGGAAGATCCGAGGAAGAACGTTATGATTAGTTGGAACCAAACTGGGGCGTGTTTGGGAGACGAATGCAGACCTAGACTAATCGGTTTTCTCAATTGCAGCAACGTTGGAGTCTCTAACGTTACTCTCAACCACCCTGCTTATTGGTGTAACAACATATCCATTCACGATATTGCAATTTATGGGGACTTCAACATACCAAACAATGATGGAATTGACATTGAGGACTCCAACAACACAGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAGTCCTACACGGGCCCTGTTTACAACCTTACAGTCACCAACAGTTGGATTCGATCCAAATCTTCTGCGATTAAACTCGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGACAATATCGCTATTGTTGATTCCCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATAAATATCAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAGCCTATCTACGTCACTAGTTGCCCGCGAGACTCAACCTCAAAGGAGGCTTCAATCTCAAACATACTTTTCATTAACATAACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGTTAAGAAATTTGAGATTCGTCAACATGGACATCACTTACAGAAGGTTCACCAGTTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTGGTAAAACACAGAACTGCAGGGATTATGATGGAGCACATTGAAGGGCTTGTGGTTCAAAATGTTGAAATGAGATGGTCAAACAGTGAACTAGAGCAGTGGAATAATCCTTTAGAGTTCAGGCCATCTACTGTGAATAACATCTCTTTTCTTAATTTTAATTCTGGTTTGTATTCAAATAGCAAATCCAATTATTAA 1383 0.4743 MDKKPLLFLLFFLLTRSLLATSHPLNPIPLTLSVVDFGATGDGLRYDTAEIQSAINSCPAGCPCHVTFPAPGKYLTATVFLKSGVVLNVEAGATILGGTRLEDYPEESWRWYVVVAENATDVGIRGGGVVDGQAAKFVVREDPRKNVMISWNQTGACLGDECRPRLIGFLNCSNVGVSNVTLNHPAYWCNNISIHDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYTGPVYNLTVTNSWIRSKSSAIKLGSASWFDFKHFVFDNIAIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISNILFINITANSENGIFLSGSKRGLLRNLRFVNMDITYRRFTSYAGGLLDYRPGCQELVKHRTAGIMMEHIEGLVVQNVEMRWSNSELEQWNNPLEFRPSTVNNISFLNFNSGLYSNSKSNY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0414 460 PANTHER PECTIN LYASE-RELATED 23 452 - -
Aed4g0414 460 SUPERFAMILY Pectin lyase-like 7 380 IPR011050 -
Aed4g0414 460 SMART pbh1 216 237 IPR006626 -
Aed4g0414 460 SMART pbh1 296 318 IPR006626 -
Aed4g0414 460 SMART pbh1 242 263 IPR006626 -
Aed4g0414 460 SMART pbh1 333 358 IPR006626 -
Aed4g0414 460 SMART pbh1 189 215 IPR006626 -
Aed4g0414 460 Gene3D - 24 383 IPR012334 -
Aed4g0414 460 Pfam Glycosyl hydrolases family 28 64 376 IPR000743 GO:0004650|GO:0005975
Aed4g0414 460 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 23 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0414 Aed-Chr4 2944634 2947086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0414 30 454 Glycoside Hydrolase AT3G57790 67.120 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0414 - - gmx:100794954 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0414 4 2944634 2947086 Aed4g0414 4 2944634 2947086 ECH