LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0335	ATGAAAAAACCGCTTCTTGTTCCCCATTCTCTGCGTTCAGCCCCTAAACCCCAACCACTGCATAATCTCCAACACCGTAAACCACTCTCCTCTGTGCCGGTCTCCACAATCCAAACCAAATGGAACTCGAAAACCAACGTGATAATCACACACCCAACCCTTGTTGTAATGGAATTATGTTCCTCGATGTACCAACTGCGTCAAATTCAAGCACGCATGACTCTCACCGGCCTCATCAACGACACCTTCCCCCTCAGCAGAGTCCTTGCGTTCTGCGCCCTCGCCGACGCAGGCGACATCCGCCACGCCCTCCGTCTCTTCCGCCGGATCACCGAACCCAACACTTTCATGTGGAACACCATGATCCGAGGCTACAACAAAGCCCGAATTCCCACCACCGCATTCTCCTTCTTCCTCCACATGCTCCGAGTACGCGTTCCGTTCGATGCGAGAACCTTCGTTTTCGGGCTCAAGTCCTGCGAGCACCTTTCGGGGGCTTCCCACGGGGAATCCAATGACAAACCTGAGGAATCATTAAAATTGTTTCACGAAATGCTTGGGGAAGGTTTTGTTCCGGGTGAGCACACCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAGTTTGGGTTGCTGGATTCATCAATATTTTGTTGATGGAAAAAGACTGCCACTTAGTGCAACTTTGGCAAATGCCATCATAGATATGTATGCCAAATGTGGAAACATAGATGCAGCTGCGGAAGTCTTTGGTGCAATGTCAGAGAGAAATTTGATTTCTTGGAATTCTATGATTGCAGGGTATGCTTCCAATGGCCAAGCAAAGCAAGCTGTTGAAGCTTTTGATCAGATGAGGCGTATGGGATTTAGGCCGGACGATATTACGTTTGTGAGTTTGTTGACGGCTTGCAGTCACGGTGGTTTGGTTTCTGAAGGTCAAGAATACTTTGATGCCATGGAAAGAAACTATGGGATAAAACCCAAAAAGGAGCATTATGCTTGCATGATTGATCTACTAGGTAGAACTGGGCTTCTGGAAGAAGCTTACAAGTTAATAACGAACATGCCAATGCAACCATGTGAGGCAGCTTGGGGTGCTTTACTAAGTGCTTGTAGAATGCATGGTAATGTTGAGCTGGCCAGTTTGTCTGCTCTTAATCTTCTGAACTTGGATCCAGAAGACAGTGGCATTTACGTGCTGCTGGCGAATATTTGTGCTAATGAGAGAAAATGGGATGATGTAAGGAGGGTGCGGAGTTTGATGAGAGACAAGGGTGTGAAGAAGACTCCTGGTCATAGCTTAATAGATATAGATGGTGAATTTAATGAGTTTTTGGTGGCAGATGAATCACACCCTCAATCTGAGGAGATCTATAAAGTACTGGAGGAAATATTTTTGTTGTCAAAATTGGAAGACTGTGACTCTGAGTTATTATAG	1446	0.464	MKKPLLVPHSLRSAPKPQPLHNLQHRKPLSSVPVSTIQTKWNSKTNVIITHPTLVVMELCSSMYQLRQIQARMTLTGLINDTFPLSRVLAFCALADAGDIRHALRLFRRITEPNTFMWNTMIRGYNKARIPTTAFSFFLHMLRVRVPFDARTFVFGLKSCEHLSGASHGESNDKPEESLKLFHEMLGEGFVPGEHTLVSVLSACGQLSCLSLGCWIHQYFVDGKRLPLSATLANAIIDMYAKCGNIDAAAEVFGAMSERNLISWNSMIAGYASNGQAKQAVEAFDQMRRMGFRPDDITFVSLLTACSHGGLVSEGQEYFDAMERNYGIKPKKEHYACMIDLLGRTGLLEEAYKLITNMPMQPCEAAWGALLSACRMHGNVELASLSALNLLNLDPEDSGIYVLLANICANERKWDDVRRVRSLMRDKGVKKTPGHSLIDIDGEFNEFLVADESHPQSEEIYKVLEEIFLLSKLEDCDSELL	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0335	481	MobiDBLite	consensus disorder prediction	1	25	-	-
	Aed4g0335	481	Gene3D	Tetratricopeptide repeat domain	314	440	IPR011990	GO:0005515
	Aed4g0335	481	Pfam	E motif	377	438	IPR046848	-
	Aed4g0335	481	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	114	148	IPR002885	-
	Aed4g0335	481	PANTHER	PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED	172	475	-	-
	Aed4g0335	481	Pfam	E+ motif	446	467	IPR046849	-
	Aed4g0335	481	Gene3D	Tetratricopeptide repeat domain	219	313	IPR011990	GO:0005515
	Aed4g0335	481	Gene3D	Tetratricopeptide repeat domain	74	210	IPR011990	GO:0005515
	Aed4g0335	481	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	35	170	-	-
	Aed4g0335	481	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	172	475	-	-
	Aed4g0335	481	Pfam	PPR repeat	116	143	IPR002885	-
	Aed4g0335	481	Pfam	PPR repeat	335	358	IPR002885	-
	Aed4g0335	481	Pfam	PPR repeat	172	190	IPR002885	-
	Aed4g0335	481	Pfam	PPR repeat family	260	307	IPR002885	-
	Aed4g0335	481	TIGRFAM	PPR: pentatricopeptide repeat domain	262	295	IPR002885	-
	Aed4g0335	481	TIGRFAM	PPR: pentatricopeptide repeat domain	117	146	IPR002885	-
	Aed4g0335	481	TIGRFAM	PPR: pentatricopeptide repeat domain	234	260	IPR002885	-
	Aed4g0335	481	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	260	294	IPR002885	-
	Aed4g0335	481	PANTHER	PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED	35	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0335	Aed-Chr4	2404530	2406542	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g0335	176	476	Glycoside Hydrolase	AT3G49170	40.264	4.80e-72	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0335	-		-	gmx:100790541	585.489