Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0334 ATGCTCACGCTCTATATAAACGAAAACCCAACCTCACACTCCTCACAATTCCAAAGCGCGATCTCTATTCTCTTCTCTTCTCTCTGCGAAGTTCTAAATCTCTCTATTTTGAATTTCAAATCAACGACGATGAGTTCCACAGAGGCCGCAGCCACAACCAAGAAGGGTGGAAGAGGGAAACCAAAGAGCACAAAGTCCGTTTCCCGTTCCTCCAAAGCCGGGCTCCAATTCCCCGTCGGTCGCGTTGCTCGCTACCTCAAGGCTGGCCGCTACGCCCAGCGCGTCGGATCCGGTTCCCCTGTTTACCTCTCCGCCGTTCTCGAATACCTCGCTGCTGAGGTTTTGGAGCTTGCGGGGAACGCTGCGAGGGACAACAAGAAAACAAGGATCGTTCCGAGGCACATTCAACTTGCGGTGAGGAACGACGAGGAACTTAGCAAGCTTATGGGTTCCGTTACTATTGCGAACGGTGGTGTTCTGCCTAACATTCACCAGAATTTGTTGCCCAAGAAGGCCGGTGGCAAGGGGAAGGGCGAGATTGGATCTGCTAGTCAGGAGTTTTAG 564 0.523 MLTLYINENPTSHSSQFQSAISILFSSLCEVLNLSILNFKSTTMSSTEAAATTKKGGRGKPKSTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKAGGKGKGEIGSASQEF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0334 187 ProSitePatterns Histone H2A signature. 73 79 IPR032458 -
Aed4g0334 187 SMART h2a4 54 174 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 MobiDBLite consensus disorder prediction 47 72 - -
Aed4g0334 187 CDD H2A 55 169 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 PANTHER HISTONE H2A 51 185 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 MobiDBLite consensus disorder prediction 168 187 - -
Aed4g0334 187 Pfam Core histone H2A/H2B/H3/H4 50 140 IPR007125 GO:0003677
Aed4g0334 187 SUPERFAMILY Histone-fold 68 171 IPR009072 GO:0046982
Aed4g0334 187 PRINTS Histone H2A signature 109 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 PRINTS Histone H2A signature 123 137 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 PRINTS Histone H2A signature 151 169 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 PRINTS Histone H2A signature 65 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 PRINTS Histone H2A signature 94 109 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aed4g0334 187 Gene3D Histone, subunit A 52 178 IPR009072 GO:0046982
Aed4g0334 187 PANTHER HISTONE H2AXA-RELATED 51 185 - -
Aed4g0334 187 Pfam C-terminus of histone H2A 143 177 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0334 Aed-Chr4 2403004 2403866 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0334 K11251 - gmx:100818215 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0334 4 2403004 2403866 Aed4g0334 4 2403004 2403866 ECH