Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0307 ATGGCAAGTCTCGCGCCACACTTCTCATTCTCAGTGATTCCTCGGAACCACCGAAAACCCAAATGCTCTTGTTTTCACAAACCCCTTATCCAAAAAAGGAAGCAACTTGGATTGCAAAACCTCGTCTTCCCCAATTCTTCTTCAAAATTGTGTGCCACGTCACGGTTGTCCATCGAGGAAACGGAGCAGAAAGTCGGAACCTTGACCCGACCCGAAGACCGAAAAGGGTCATTGGCGTATTTGTTTAGGACAGAAACTGGTGGCGGGTTGGTGAGAGTTTATGTCACAAAGGGAAAAGATAGGTACTTTGTTTACATTGAGATTTCTTCGTTGGATATAAGTGGTGGTGGAGTAGGTGAAACTCTTTTGTTGTGTTGGGGTGTGTATAGAAGTGATTCATCGTGTTTTGTGGATCTGGATACGATAGGTTTGAGTGAAAATGCCGCAACGGGGATTAATGCTAGTTCCTTGGTGCAAACTTCTGATGGAAAGTTTGCAGCTGATTTGGAATTTGATGCCAAGCATGTTCCTTTGTACTTGTCGTTTTTCTTGATGTCATCTTTGGATGCAGGGTTGGAGATCAGAAGCCATAGGAGAACGAATTATTGCGTGCCGGTTGGTTTGCTTCCGGGGTACCCAGCTCCTTTGGGGCTCTCTTATTCTCCTGGTGGATCTGTGAATTTTGCCATTTTCTCTAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAATGGTGTGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGTGATATCTGGCATGTCTCGATTGAGAGTGCCAAGGGTTTTGTGAGCTATGGTTATCGCAGCAGAGGGGGTGTTCTCAAGAAGAACAAGGATGATGGTTTCACTGAGCGTGCTGTTTTGGATCCGTATGCTAAGATCGTTGGGAGTCTTGGATCGGTGAAGAATCTTGGATGGTTGGGGAAGGAACCTGCTTTTGACTGGGGTGGTGATTGTCATCCGGATTTGTCCATGGAGAAACTAGTGGTTTATAGGTTGAATGTGGAGCGCTTTACGCAGCATGAGTCCAGCCAACTTCCAAGTGGTGTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTTCAGCATTTTAAAGATCTAGGAGTGAATGCTGTTCTTTTAGAGCCGATTTTCACGTTTGATGAGAAAAAGGGACCATATTTTCCTTGCCACTTTTTCTCTCCGATGCACATTTATGGACCATCTGGTGGTCCTGTATCTGCAATTACCGCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTTGTGGAGGTTGTTTTCTCCAATACTGCTGAGGTTGGTGCTCTACAGGGAATTGATGACTTGTCCTACTATTATGCAAATGGAGTTGGTGATTTGAAGATACAGTGTGCTTTGAACTGTAACCATCCTGTAGTGCAAAATTTGATTCTGGATAGTCTTCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCGCACCTGCTGAGGGGATTTCACGGGGAGTACTTGTCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCTGTACTCTCCAAGACTAGGATCATTGCAGATTGTTGGGATCCCCATGGCATGGTAGCAAAGGAAATCCGCTTTCCTCATTGGATGAGATGGGCAGAAATAAATACAAATTTCTGTCATGATGTGAGGAACTTTTTAAGGGGTGAAAATCTTCTTAGCGACCTTGCAACAAGACTTTGCGGGAGCGGGGACATGTTTTCTGGTGGACGAGGCCCTGCATTCTCGTTTAATTACACTGCCAGGAATTTTGGTCTTTCTCTCGTGGACTTGGTTAGCTTCACCAGTGATGATGAATCAAGTTGGAATTGTGGAGAAGAAGGAGCTACTAACAACATTGCTGTCCTTGAAAGACGACTCAAACAAATCCGCAATTTCCTCTTCACTCTGTTTGTGTCATTAGGAGTACCTGTTCTCAACATGGGAGATGAATGTGGCCATTCTTCTGGAGGTTCTACTGCATATGGCGATATAAAGCCTTTCAATTGGAGTGCTTTGAAAACAGGCTTTGGTAAACAAATCACACAATTCATTTTCTTTTTAAGTTCATTGAGAAGGAGGAGGAGCGATCTTCTTCAGAGGAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGCACTCCACCAAGATGGGAAGATCCATCCTGCAAGTTCCTGGCCATGACTTTGAAGGCCGAAGTGACAGAGGTTCTAGACAGATCTGTATCTTTGGATTTATCCGGGGATCTATTTATTGCTGTCAATGCAGCTGATCATTCAGAAACTGCACTTCTACCCCTGCCTCCAGAAGGAATGTCATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCAGGCTTTTTCTCAACCAGTGGTGAAGTTGTCCCTGAGATGATAGAAGGTTTGTTTACTTATCAAATGAAGCCTTACAGCTGCACTTTGTTTGAGGCAAATGATAGTAGTACCATTTCCCCAGTCCACGACTTTCTTCAACCTTTGTAA 2598 0.4415 MASLAPHFSFSVIPRNHRKPKCSCFHKPLIQKRKQLGLQNLVFPNSSSKLCATSRLSIEETEQKVGTLTRPEDRKGSLAYLFRTETGGGLVRVYVTKGKDRYFVYIEISSLDISGGGVGETLLLCWGVYRSDSSCFVDLDTIGLSENAATGINASSLVQTSDGKFAADLEFDAKHVPLYLSFFLMSSLDAGLEIRSHRRTNYCVPVGLLPGYPAPLGLSYSPGGSVNFAIFSRHAESVVLCLYDENGVEKPALELDLDPYVNRTGDIWHVSIESAKGFVSYGYRSRGGVLKKNKDDGFTERAVLDPYAKIVGSLGSVKNLGWLGKEPAFDWGGDCHPDLSMEKLVVYRLNVERFTQHESSQLPSGVAGTFTGLAKKVQHFKDLGVNAVLLEPIFTFDEKKGPYFPCHFFSPMHIYGPSGGPVSAITAMKEMVKTMHANGIEVLVEVVFSNTAEVGALQGIDDLSYYYANGVGDLKIQCALNCNHPVVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTRIIADCWDPHGMVAKEIRFPHWMRWAEINTNFCHDVRNFLRGENLLSDLATRLCGSGDMFSGGRGPAFSFNYTARNFGLSLVDLVSFTSDDESSWNCGEEGATNNIAVLERRLKQIRNFLFTLFVSLGVPVLNMGDECGHSSGGSTAYGDIKPFNWSALKTGFGKQITQFIFFLSSLRRRRSDLLQRRSFLKEENIEWYGSDGTPPRWEDPSCKFLAMTLKAEVTEVLDRSVSLDLSGDLFIAVNAADHSETALLPLPPEGMSWYRLVDTALPFPGFFSTSGEVVPEMIEGLFTYQMKPYSCTLFEANDSSTISPVHDFLQPL 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0307 865 SUPERFAMILY E set domains 210 336 IPR014756 -
Aed4g0307 865 CDD AmyAc_plant_IsoA 340 728 IPR044096 GO:0019156|GO:0019252
Aed4g0307 865 SUPERFAMILY (Trans)glycosidases 327 726 IPR017853 -
Aed4g0307 865 Gene3D - 736 858 IPR013780 -
Aed4g0307 865 CDD E_set_GDE_Isoamylase_N 215 348 IPR044505 -
Aed4g0307 865 Coils Coil 716 736 - -
Aed4g0307 865 PANTHER GLYCOGEN DEBRANCHING ENZYME 56 852 - -
Aed4g0307 865 Pfam Alpha amylase, catalytic domain 368 454 IPR006047 GO:0005975
Aed4g0307 865 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 215 308 IPR004193 GO:0004553|GO:0005975
Aed4g0307 865 Gene3D Immunoglobulins 199 319 IPR013783 -
Aed4g0307 865 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 56 852 - -
Aed4g0307 865 SMART aamy 348 723 IPR006047 GO:0005975
Aed4g0307 865 Gene3D Glycosidases 325 735 - -
Aed4g0307 865 SUPERFAMILY Glycosyl hydrolase domain 735 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0307 Aed-Chr4 2238231 2240828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0307 18 853 Glycoside Hydrolase AT1G03310 56.725 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0307 K01214 - gmx:100777953 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0307 4 2238231 2240828 Aed4g0307 4 2238231 2240828 ECH