LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0259	ATGGCTTCTCACTTCTCCACTCACTGCCACCTTCCCTCTTTCTCTTCTTCTAACCATTTCCCTTTTCAATCTTCTTCTTCTTCTTCTTTCTCTCTTCACCACTTCAACAACTCCTCTCTGGGTGCCGTGTCGTTCGAGACTAACGACAAACAAGAGATAAGATGCAGAGCAATATCCAAACCACGAACACAAGAATATCAAGACATATTTCAAGGTAGTCTACCAACGTTAAAGTTTCGTGAGATTAATGTGGAAGATGACATAGAAGAAGAGCAAGACATTGGGAAGGTTTTGGTGGGAAATGAGACAAAGAAGCGAGTGGACACTATCAAATCAATATTGGGTTCCATGGAAGATGGAGAGATAACAGTGTCTGCTTATGACACTGCTTGGGTTGCTCTGATAGAAGATGTTCATGGAAGTGGTAACCCTCAGTTTCCAACGAGTCTAGAGTGGATAGCGAAAAATCAACATCCCGATGGTTCATGGGGTGATAAGGAAATATTTTCAGCCCATGATCGGATTATTAATACGTTGGCTTGTGTTGTTGCATTAAAATCATGGAACATGCACCCTGAAAAGTGTGAAAAAGGAATGACATTTTTTAAAGAGAATCTAAACAGGCTTCAGAATGAGAATGTGGAACATATGCCAATTGGGTTTGAAGTAGCTTTTCCATCACTTCTTGACATGGCTCGTGGTTTGAAGATTGAAGTGCCGGATAATTCCCCTATCCTGAACGAAATCTTTGCAATGAGAAACGTAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCAACGAGTCTGCTTCATAGTTTGGAAGGGATGTCAGGCCTTGACTGGAAAGAGCTTCTAAAACTGCAGTCTCAAGACGGGTCCTTCTTGTTTTCTCCGTCCTCCACAGCTTTCGCTCTCATGCAAACTAAAGATCAAAATTGTCACAGTTACTTGAATAAAGTGGTCAAGAAGTTCAATGGGGGAGTTCCAAACGTGTATCCAGTGGATTTGTTCGAACATATTTGGGTGGTTGATAGGCTTGAACGCCTAGGAATATCTCAGTATTTTCAGCAAGAGATCAAAGACTGTTTGAGCTATGTTAACAGATATTGGACTGAAAAGGGTATTTGTTGGGCAAGAAATTCAAATGTTCATGACATTGATGACACAGCAATGGGTTTCAGATTACTAAGGTTACACGGGTATCAGGTTTCAGCCGATGTGTTCAAGAACTTTGAGAGAAATGGTGAATTTTTCTGCTTTAAGGGGCAGACAACACAAGCGGTGACAGGAATGTTTAATCTGTATAGAGCCACACAAGTAATGTTCCCGGGAGAAAAAATTCTTGAACATGGGAAGCACTTCTCTGCTAAATTTTTAAGGCAGAAGAGAGCAGCAAATGAGCTGGTAGATAAATGGATCATAATGAAGAACTTGGCAGAAGAGGTTGGTTACGCTTTGGACGTACCTTGGTATGCAAGCTTACCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGACGTGTGGATAGGAAAAACCCTTTATAGGATGGCCTATGTGAACAACAATAACTATTTGGAGTTTGCTAAATTAGATTACAACAATTGTCAGGCAGTGCATTTAGTAGAGTGGGGAAGAATTCAGAAGTGGTACTCAGAATCTAGATTGGGAGCGTTTGGAATGAACAGAAGAACACTTCTGTTGGCCTATTTTCTGGCAGCAGCAAACATATTTGAGCCTGAAAAGTCTCATGTGAGACTAGCGTGGGCCAAAACGACAATCTTACTTGAGACCATAACATCTTATTGGGAAAAGTGGCTATCAAGTTGGAATGTGGAAGGAGACAAATGTGAAGGGCAAGGAGAGCTTTTGGCGCAAATAATAAACCTATGTGGCGGGCATTGCATTTCTGAGGATCAAGTGTTCGATCCACAATATCAGAGTATCCTTCAACTCACTAACACACTCTGCCATAGACTCCGTTCTCATCAAAAGGACAAGGAACTCGAGAGTGGCAACTGTGTAAACAGCATGATCAGCCCAGAAGAAGAGTCAAAAATGCAAGAACTGGTGCAATTGGTGTACCAAAAATCTCCAACTGGCATTGATTTTAATATCAAGAATAGTTTCCTCACAGTGGCCAAGAGTTTATACTATACAGCTTTCTGTGATTCAAGGACCATCAACTTCCATATTGCCAAAGTTCTGTTTGATAAAGTCGTTTAA	2247	0.4108	MASHFSTHCHLPSFSSSNHFPFQSSSSSSFSLHHFNNSSLGAVSFETNDKQEIRCRAISKPRTQEYQDIFQGSLPTLKFREINVEDDIEEEQDIGKVLVGNETKKRVDTIKSILGSMEDGEITVSAYDTAWVALIEDVHGSGNPQFPTSLEWIAKNQHPDGSWGDKEIFSAHDRIINTLACVVALKSWNMHPEKCEKGMTFFKENLNRLQNENVEHMPIGFEVAFPSLLDMARGLKIEVPDNSPILNEIFAMRNVKLTRIPREMMHKVPTSLLHSLEGMSGLDWKELLKLQSQDGSFLFSPSSTAFALMQTKDQNCHSYLNKVVKKFNGGVPNVYPVDLFEHIWVVDRLERLGISQYFQQEIKDCLSYVNRYWTEKGICWARNSNVHDIDDTAMGFRLLRLHGYQVSADVFKNFERNGEFFCFKGQTTQAVTGMFNLYRATQVMFPGEKILEHGKHFSAKFLRQKRAANELVDKWIIMKNLAEEVGYALDVPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLEFAKLDYNNCQAVHLVEWGRIQKWYSESRLGAFGMNRRTLLLAYFLAAANIFEPEKSHVRLAWAKTTILLETITSYWEKWLSSWNVEGDKCEGQGELLAQIINLCGGHCISEDQVFDPQYQSILQLTNTLCHRLRSHQKDKELESGNCVNSMISPEEESKMQELVQLVYQKSPTGIDFNIKNSFLTVAKSLYYTAFCDSRTINFHIAKVLFDKVV	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0259	748	Pfam	Terpene synthase family, metal binding domain	533	606	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Aed4g0259	748	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	86	610	-	-
	Aed4g0259	748	SFLD	Terpene Cyclase Like 1 N-term - Enzymatic	101	523	-	-
	Aed4g0259	748	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	126	309	IPR008930	-
	Aed4g0259	748	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	86	610	-	-
	Aed4g0259	748	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	606	744	-	-
	Aed4g0259	748	SFLD	Terpene Cyclase Like 1 N-term	101	523	-	-
	Aed4g0259	748	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	606	744	-	-
	Aed4g0259	748	Gene3D	Farnesyl Diphosphate Synthase	543	607	IPR008949	-
	Aed4g0259	748	Gene3D	Farnesyl Diphosphate Synthase	608	748	IPR008949	-
	Aed4g0259	748	Gene3D	-	109	541	IPR036965	GO:0010333\|GO:0016829
	Aed4g0259	748	SUPERFAMILY	Terpenoid synthases	528	685	IPR008949	-
	Aed4g0259	748	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	294	514	IPR008930	-
	Aed4g0259	748	Gene3D	-	126	338	-	-
	Aed4g0259	748	Pfam	Terpene synthase, N-terminal domain	283	489	IPR001906	GO:0010333\|GO:0016829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0259	Aed-Chr4	1879982	1889533	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0259	K04120		-	gmx:100784193	1145.57

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g0259	4	1879982	1889533	Aed4g0259	4	1879982	1889533	ECH