Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0250 ATGGAATCGGAATCCAAGAACGACGTCGAAGTCGCTCCGGCCTTAATCGCCGTTCACCCCGACCAATCCTCCGTCGCCGTCGCAGTAGGCCCTCACCTCCGTGTCTTCGACTTTGTTAGCGGTTCTGCAGCTTCTTTAACGGACGACTCTGATGGCGTCGCATTCCACAAGGACAGCATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTCTTCGTTTCCGCCGGTGACGATAAAACCGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACAGTGTCCTCCGAGAAGAGAGTAACTGCAGTTGCAATTAGCAACGACGGAACCTTCGTGTGCTTCGCTGACAAATTCGGCGTTGTTTGGGTTGTGGATCTTGATCCTCCGTCACGCGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGATTTTTCACCAGATGGTCGTTTTATTTTAAGCGCCGACCGTGATTTCAAAATTCGCGTTACTAATTTCCCCAAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCTTCCCTTGCCTTCATTGAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCCACAGTTCGATTGTGGAATATTGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAATTAAGGCAGGACTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCCATTACTGATTTATGCACTGTTCTGGATGGTTTACTTGTTGCAGTGGCCATTCAGAGTAATTATCCCTCTTGGGCTCGTGTCCGAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCTGGGAGATGATAACATACCTGGGGGAGAAGAGCTGCTAGAAACGTTGCAAGGATCTGCATCCGTTGACGACAATGCCTTTTTAGCTGCAGCCGAAGCTGTCAAAACAGCAATGCGCAACCTATTGATAAAAAAACAATACCCTTCAGAGAATAGGGAATATAGGAAGAAAAGCAGAAATGACAGAAAACGCAAGGCATAG 1089 0.4784 MESESKNDVEVAPALIAVHPDQSSVAVAVGPHLRVFDFVSGSAASLTDDSDGVAFHKDSIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDLDPPSRDKKPAPLLSHYCSIITSLDFSPDGRFILSADRDFKIRVTNFPKKPLNGAHQIQSFCLGHTEFVSSLAFIEAQECPQGLLLSGSGDSTVRLWNIDSGALLDTCEVAIKAGLLESNGKAEEHGHAITDLCTVLDGLLVAVAIQSNYPSWARVRVISGIDVEQEPVVLGDDNIPGGEELLETLQGSASVDDNAFLAAAEAVKTAMRNLLIKKQYPSENREYRKKSRNDRKRKA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0250 362 Gene3D - 14 97 IPR015943 GO:0005515
Aed4g0250 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Aed4g0250 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Aed4g0250 362 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 361 IPR028884 GO:0036265
Aed4g0250 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Aed4g0250 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Aed4g0250 362 PANTHER WD40 REPEAT PROTEIN 4 279 360 IPR028884 GO:0036265
Aed4g0250 362 PANTHER WD40 REPEAT PROTEIN 4 14 274 IPR028884 GO:0036265
Aed4g0250 362 SMART WD40_4 88 126 IPR001680 GO:0005515
Aed4g0250 362 SMART WD40_4 47 85 IPR001680 GO:0005515
Aed4g0250 362 SMART WD40_4 133 172 IPR001680 GO:0005515
Aed4g0250 362 SMART WD40_4 180 224 IPR001680 GO:0005515
Aed4g0250 362 Gene3D - 98 292 IPR015943 GO:0005515
Aed4g0250 362 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Aed4g0250 362 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Aed4g0250 362 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Aed4g0250 362 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Aed4g0250 362 SUPERFAMILY WD40 repeat-like 16 279 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0250 56 290 Miscellaneous Gene Families AT5G08390 23.673 6.88e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0250 K15443 - gmx:100786310 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0250 4 1791630 1798787 Aed4g0250 4 1791630 1798787 ECH