Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0168 ATGGAGCGGTTGAAGTGGGCGCAGCTGGGGGAGAGGCTGAAGACGGGTGGGGCCCAGATGGGGCGAATGGTGAGCGGAAAAGTGAAGGAGATGCTTCAGGCACCGACGGCGGAGTCGAAGATGGTCGACGAGGCCACCATGGAGACCATGACGGAGCCCAATTGGGGAATGAATCTCCGAATCTGCGGCATGATCAACAGCGACAACCTCAACGGCTCTGAGGTAGTCAAGGCCATCAAGAGAAAGATCAACCACAAGAGCCCTGTGGTTCAGACACTCAGCCTCGACCTCCTCGAAGCCTGCGCCATGAACTGCGACAAGGTCTTCTCCGAAATCGCCTCCGAGAAGCTTCTCGATGACATGCTCCGCTTGATCGATAACCCGCAGGCCCAACACCACACCCGCACGCGGGCTTCTCACTTGATTCGGGCCTGGGGCGAGTCCACGGATCTCGCTTATCTCCCCGTCTTTCGTCAAACTTATATGAGTTTAAAAGAAAGGGGTAAACCACTTGACATGGCGGGAGGAAATTCACCACCTGTTCCGTATGCATCAGAGTCATATGAAAATCAATATCCTGTAGATGCCCCTGAAAGATACCCAATTCCTCTAGCTGAACTACATGATATGGATAATCCGGTGGCAGCTTTCTCTTCTAATTACCAACACATATCAGTTGAGGAGAAGAAAGAGCATCTCGTGGTTGCTCGAAACAGTCTCGAATTGCTCTCCAGCATATTGAATTCTGAGGCTGACCCAAAACCTTTGAAGGAAGATTTAACCGTGAGCATGTTGGATAAGTGCAAGCAATCACTCTCTATCATCAAGGGGATTGTGGAAAGCACTACAAACGACGAAGCAACACTTTTTGAGGCTTTATATCTCAATGATGAGTTGCAGCAGGTAGTTTCTAAATATGAGGAGTTAGAAGCTGCTCAAAGTTCTGTGGCACAACAACCTCAAAATGCTGACACTGACAACAAGCATGATGCCGAAGCTGTTCAAAATCCCAACCAAGTGCCCGAAAATGATGAATCTGAAGCTGCTCAGAGTCTGGATCGAAAGCTGCCCCAAAAGTCTAACACTGTTGAAGTGAACGCAACCGAGGGTGAGGGGGATGGTCTTGCTGAAACAAAAATAGTGGATGGTCTTGCTGAAATCAAAATAGTGGATGGCACGAAGGAGAAGAATGCTGAATCTAGTTTCAAGCGAGACACTGCCGAATGA 1227 0.4923 MERLKWAQLGERLKTGGAQMGRMVSGKVKEMLQAPTAESKMVDEATMETMTEPNWGMNLRICGMINSDNLNGSEVVKAIKRKINHKSPVVQTLSLDLLEACAMNCDKVFSEIASEKLLDDMLRLIDNPQAQHHTRTRASHLIRAWGESTDLAYLPVFRQTYMSLKERGKPLDMAGGNSPPVPYASESYENQYPVDAPERYPIPLAELHDMDNPVAAFSSNYQHISVEEKKEHLVVARNSLELLSSILNSEADPKPLKEDLTVSMLDKCKQSLSIIKGIVESTTNDEATLFEALYLNDELQQVVSKYEELEAAQSSVAQQPQNADTDNKHDAEAVQNPNQVPENDESEAAQSLDRKLPQKSNTVEVNATEGEGDGLAETKIVDGLAEIKIVDGTKEKNAESSFKRDTAE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0168 408 SUPERFAMILY ENTH/VHS domain 35 168 IPR008942 -
Aed4g0168 408 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Aed4g0168 408 SUPERFAMILY GAT-like domain 185 310 - -
Aed4g0168 408 Pfam VHS domain 39 165 IPR002014 GO:0035091|GO:0043130
Aed4g0168 408 Pfam GAT domain 237 310 IPR004152 GO:0035091|GO:0043130
Aed4g0168 408 PANTHER TOM1-LIKE PROTEIN 2 1 361 - -
Aed4g0168 408 PANTHER TOM1-LIKE PROTEIN 1 1 361 IPR044836 GO:0035091|GO:0043130|GO:0043328
Aed4g0168 408 CDD VHS 39 165 - -
Aed4g0168 408 MobiDBLite consensus disorder prediction 332 346 - -
Aed4g0168 408 Gene3D - 218 313 IPR038425 -
Aed4g0168 408 Gene3D - 29 181 IPR008942 -
Aed4g0168 408 ProSiteProfiles GAT domain profile. 224 311 IPR004152 GO:0035091|GO:0043130
Aed4g0168 408 MobiDBLite consensus disorder prediction 353 367 - -
Aed4g0168 408 MobiDBLite consensus disorder prediction 313 374 - -
Aed4g0168 408 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0168 Aed-Chr4 1249531 1252598 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0168 - - gmx:100777747 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0168 4 1249531 1252598 Aed4g0168 4 1249531 1252598 ECH