Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0130 ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCGCAGGTCGGGTCATACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCTAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGTGATACCGTCGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACGATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAATGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAACGTACCCAAATCTGGCACCAGTGGCATCCGAAACAATTGACACACAACCACATGTTTCTGCTTCTCTTGTAGAGCCACTGGTCTCTGATTTAGCAGCTTCAGACTATGGTTTGGAGGAAGAAGCCAGGGAATATGTCAACTCGGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGACTTTGAAACCGAAATTCTGGTGGAGGAAACTCCCGTACAAGAGGCATCTCCACCAATTAATAGCGTTGCACACACTGTCCAAGAACCCCCTGTTGCCCTTGTGGAAGAGTCCTTGGAGGAGCCTATTAAGAAAACATATGCATCTATTTTACGAGTTGCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCACAACATGCTCCACAACAGCCTTTTAAAAGTGCTCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCTGTTGTTCAGCAGTCAAGCTCTGCATCTACGTATGTCCCTGAGTCAGGGGCTGAGGCAGCAGAAGAAGGCTATGGGCTAGAAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTGATGTTACTGAAGAGGAGATTGATCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTGGAATTTGAAGACATTATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTTGGTGCAGCTCGGGGAGGAAGAGGAGGAGGAGGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCTGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTAATCAGGACAGTTCAGACTACACCAGACAAAGAGGCGATGGTTATGTTCAGCGTGGTTCACGATGA 1386 0.4639 MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDTVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDINGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVTYPNLAPVASETIDTQPHVSASLVEPLVSDLAASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLQEDFETEILVEETPVQEASPPINSVAHTVQEPPVALVEESLEEPIKKTYASILRVAKGLPVLSAAPQHAPQQPFKSAPPPSELNHVAQPVVQQSSSASTYVPESGAEAAEEGYGLEEEDEVTSVYVRNLPADVTEEEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSVGAARGGRGGGGRGRGRGSYQADALRGRFGGRSMGRGGNQDSSDYTRQRGDGYVQRGSR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0130 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 408 IPR000504 GO:0003723
Aed4g0130 461 Gene3D - 316 435 IPR012677 -
Aed4g0130 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Aed4g0130 461 Gene3D - 5 132 - -
Aed4g0130 461 PANTHER GB|AAD20086.1 9 455 - -
Aed4g0130 461 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Aed4g0130 461 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Aed4g0130 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 455 IPR039539 -
Aed4g0130 461 SUPERFAMILY RNA-binding domain, RBD 319 429 IPR035979 GO:0003676
Aed4g0130 461 CDD RRM_SF 325 396 - -
Aed4g0130 461 MobiDBLite consensus disorder prediction 400 461 - -
Aed4g0130 461 CDD NTF2 10 130 IPR018222 -
Aed4g0130 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 388 IPR000504 GO:0003723
Aed4g0130 461 SMART rrm1_1 324 396 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0130 Aed-Chr4 957436 964103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0130 - - gmx:100787900 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0130 4 957436 964103 Aed4g0130 4 957436 964103 ECH