Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0127 ATGTCTAAGGAGGATGATCACTCTTCACAGGATTCTTCGTCTGATCTTGAATTGTCTCTCTCCTTGACCCTCTCTCCCTATGCCACCAAGACACCACCTCATTCTGCTGCTTCCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATACAGAATGAACAGCTATAATAGCCATGCAAAATCCCCAGCCACAGATGTATTCAATTCTACAGTTGACAAAAGAGCAAGCAATATTAATAGTAGTGGGGTTAGGAAGAGTGCAGATGGTGGCGGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAATCCCCGGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGGTTTGGGTGCTCATGGTTCCTATGAAACCTTAGTTCAAACCTTGGGGGATATGTTTGATGAATCAACCACAGTCCTCACTCACAAAGGATCAGATGGAGAAGATCACGGTACTGTAGTTGGAGCAGATGGGCATTCAAAATTTCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATTTACTTATTTGCAGCTCCAAGATTGGAAGAAAAAAACAGAAGATCGAAATGCAAGCTCATATAGATAATAACCCAAGGGATTGCATGATGAACCTTATTGCTAAAGGATGGTACCCATGGATTCACAGGGCTGGGGATTATGAAGAACAGTGGAATCATGACTTTGTCAAATGCACCGATACAATAGATCTCTGCAAAAGAAACGTTAATCTTTCTCGGAAGCAAAACCCGTCGGTGTACCACCTTATGTACAAAGATCTTGCAACCACAACTGCAATCCCAATGACTAGGATTGCAGATATTCCAGTGATCCATGCTGTAATGATGTGCTTTGCACGCAAGCTTCCGTGCCTTGAAGATATTCCATTTGCTGGGACTGGACCTTCTAGCTTATTGTATGAGACATTGAGTGCTTCCAGGGCTGGAGAAATTCCAAAGCTTTCAGGTATTTGGCCTGTCAGAGAATTGTTGGAAAGATCAAGCATTGCAAGTGTAGGCATCTTAGCTAATGCTTTTGGAATTTCACCAAGATCAAGAACTGCAAGTGATGGACAGTCCTGGAATTGTTCTGGGATTTCACCTTCCAAGTTGTTGTTGGAGACCATGAAAGCTTGCAGGTTTGGAATAGAAAGAACAGTGGAAGGAAGAGAAGAATGGAGTTTGTTTCTTGAGAGATCAATGAAGGAAAGAGATGTGGAAGAAGCAATGTCATCTGCTTCCCAAGCTTGCCAAGACCCACAGGAACCATCCCAGAAAGAAAATTGTTATGAATTCGAACCCGAACGAGTGAAGGACACATTGATAGACTTGATGGAATTGGACCAGTGA 1416 0.4315 MSKEDDHSSQDSSSDLELSLSLTLSPYATKTPPHSAASAPSQVVGWPPLGAYRMNSYNSHAKSPATDVFNSTVDKRASNINSSGVRKSADGGGDSSNIISKEKGIPGSSLFVKVKMDGIPIGRKVGLGAHGSYETLVQTLGDMFDESTTVLTHKGSDGEDHGTVVGADGHSKFLDGSSDFVLTYEDKEGDWMLVGDLLICSSKIGRKKQKIEMQAHIDNNPRDCMMNLIAKGWYPWIHRAGDYEEQWNHDFVKCTDTIDLCKRNVNLSRKQNPSVYHLMYKDLATTTAIPMTRIADIPVIHAVMMCFARKLPCLEDIPFAGTGPSSLLYETLSASRAGEIPKLSGIWPVRELLERSSIASVGILANAFGISPRSRTASDGQSWNCSGISPSKLLLETMKACRFGIERTVEGREEWSLFLERSMKERDVEEAMSSASQACQDPQEPSQKENCYEFEPERVKDTLIDLMELDQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0127 471 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 28 196 - -
Aed4g0127 471 Pfam AUX/IAA family 29 197 IPR033389 -
Aed4g0127 471 ProSiteProfiles PB1 domain profile. 109 220 IPR000270 GO:0005515
Aed4g0127 471 MobiDBLite consensus disorder prediction 79 95 - -
Aed4g0127 471 Gene3D - 106 216 - -
Aed4g0127 471 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 196 IPR003311 GO:0005634|GO:0006355
Aed4g0127 471 SUPERFAMILY CAD & PB1 domains 105 196 - -
Aed4g0127 471 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0127 Aed-Chr4 934054 940583 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed4g0127 AUX_IAA 1.2e-36 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0127 K14484 - gmx:100789143 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0127 4 934054 940583 Aed4g0127 4 934054 940583 ECH