Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0121 ATGGCGGAAGAAAGTGCGTTGAGGGCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATAGCCGATTACTACAAAACCATCGAAAATTTTCCCGTTCTCAGCCAAGTCCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCTCCTAATCACCCTGAGCCCTTGCAGAATGTTTTGGATGATGTACAGGAAAAAATACTCCCAGGGGTGACTCACTGGCAAAGCCCGAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTAGGAGAGATGCTCAGTGCAGGTCTTAACATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTCGAGACCATTGTTCTGGACTGGCTTGCAAAGGCTTTCCAGCTGCCTGATGAGTTCTATTCTAGTGGGACAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAGTGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACATTCTGCTTTACAAAAAGCTTGCCAGTTTTTTTACTCGTTTAAGTGCAAATGTAATGATTATGCACTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGCGCTACTGTTGGTACCACTTCATCAACAGCTATTGATCCTCTGCCTACATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCAACTGCATCGATGGTGTTGAAGAAGCAGATTCATTTAACATGAATGCGCATAAATGGTTCCTGACTAACTTTGACTGTTCACTACTTTGGGTTAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAGGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTGAAATTGTGGATGGTGTTGCGACTTTATGGATTGGAAGGTCTGAGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTTATTTTGAAGAGCTTGTTAGTCAGGACAAAAGATTCAAGGTCGTTGCACCTCGCACTTTCTCTTTAGTTTGTTTTCGGCTGTTGCCCCCTCCCAATTCTGAAGATCATGGGAATAAGCTAAACAGTGATCTGCTCGACTCAGTAAATTCAACAGGAAATGTTTTCATAACACACACGGTTCTATCAGGTGAGTACATTCTACGTTTTGCAGTGGGAGCACCATTGACAGAAAGGAGGCATGTCAATCTGGCGTGGCAGGTTTTGCAAGATAAAGCCACTGCTCTACTTCAGAGTTTGTAG 1389 0.4392 MAEESALRAMDAEQLREQAHKMVDFIADYYKTIENFPVLSQVQPGYLGKLLPDSAPNHPEPLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDEFYSSGTGGGVIQGTASEAVLVVLLAARDKILRRVGRSALPKLVMYASDQTHSALQKACQFFYSFKCKCNDYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAIDPLPTLGKIAKTNKLWFHVDAAYAGSACVCPEYRNCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHIRNHIELAAYFEELVSQDKRFKVVAPRTFSLVCFRLLPPPNSEDHGNKLNSDLLDSVNSTGNVFITHTVLSGEYILRFAVGAPLTERRHVNLAWQVLQDKATALLQSL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0121 462 Gene3D - 91 356 IPR015421 GO:0003824
Aed4g0121 462 Gene3D - 5 90 - -
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 372 391 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 56 75 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 103 121 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 82 101 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 122 141 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 38 55 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 329 344 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 147 167 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 PRINTS Aromatic-L-amino-acid decarboxylase signature 15 34 IPR010977 GO:0006520|GO:0016831
Aed4g0121 462 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 292 313 IPR021115 GO:0016831
Aed4g0121 462 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 10 461 - -
Aed4g0121 462 Pfam Pyridoxal-dependent decarboxylase conserved domain 44 390 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aed4g0121 462 CDD DOPA_deC_like 85 453 - -
Aed4g0121 462 Gene3D Aspartate Aminotransferase, domain 1 357 462 IPR015422 GO:0003824
Aed4g0121 462 PANTHER BNAA07G00240D PROTEIN 10 461 - -
Aed4g0121 462 SUPERFAMILY PLP-dependent transferases 10 455 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0121 Aed-Chr4 885238 889646 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0121 K01593 - gmx:100791074 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0121 4 885238 889646 Aed4g0121 4 885238 889646 ECH