Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0055 ATGGATAATCTTCATCCCCTTCGCAATCTCAGATTCGCTCATCACACCACCCCTCTCTCCGAGCCCACCACCCCCACCCCCACCACCCCTCGCTCCACCTTCTTCCTTTCCACCTCCGGCAAAGCCCTCCTCCTCTCCCACTCCAACTCCGCCAAGCGCCCCGACACCCCCAGGAATAAATATGTCAAGCAGGTCACCGGCCGCCACAACGACACCCAGCTCCACCTCGCTGCCCAGCGCGGCGACCTCTCCTCCGTCCGCCAAATCCACGCCGAGCTCGACTCCATCATGATGGGGAGCTTCGACTTCGATTCCGAGGTCGCCAACATCCGCTCCGCCATCTTCAATGAGGTCAATGAGCTCGGCGAAACCCCCCTCTTCACCGCCGCCGATAAGGGCCACCTCAACGTCGTCCTCGAGCTCCTCCCTCACACCACCTTTGAATCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACCCCTTGCACATTGCCGCTAGCAAGGGTCATCTTGCCATTGTGCTGGCTCTACTTGATTATGCCCCAGGCTTGATTAAGACCGTTGCGCAGTCAAATGCAACTCCTCTCATCTCTGCAGCTACACGAGGCCATGCAGATGTTGTTGCAGAGTTGTTGTCTCGTGATCCTACTCAGTTGGAGATGACTAGGTCCAATGGCAAAAATGCCCTTCATCTAGCCGCACGCCAGGGACATGTCAATGTTGTCAAGATACTGCTAGGGAAAGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACCGCACTACACATGGCTGTCAAAGGGGTTAGTTCTACAGTGGTCAAACTCATTCTTGGTGCCGATGCAGCCATTGTCATGCTTCCCGACAAGTTTGGCAACACCGCATTGCATGTAGCCACAAGAAAAAAGAGGGCAGAGATAGTGCATGAGCTGTTACTTCAACCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTGGATCTAGCAGAGGCGCTTCCGATATCTGAGGAGATTCTTGAGATCAAAGAGTGTCTGATTCGTTACAATGCAGTTAAAGCCAACGACCTGAACCAACCAAGGGACGAGCTAAGAAAAACCATGACAGAAATCAAGAAAGACGTGTACTTTCAGCTGGAGCAAACTCGAAAAACAAACAAGAACGTGAATGGTATCGCCACTGAGCTACGCAAGTTGCACAGAGCTGGGATCACCAATGCTGCAAACTCAGTAACGGTGGTTGCTGTTCTGTTTGCAGCAGTTGCATTTGCAGCAATCTTCACAGTTCCCGGAGGGGACGATAATCACGGCGTGGCAGTGATGGTTCACACGGCGTCTTTCAAGGCCTTCTTCATATCCAACGCCCTTGCACTCTTCACATCACTGAGCGTGGTGGTGGTTCAAATCACGATTGTTAGAGGGGAGTTAAAGGCTGAGAGAAGGGTTGTGGAGGTGATCAACAAGTTGATGTGGCTAGCCTCTGTCTGCACCTCTGTTTCGTTCATTTCAGCGTCTTATATTGTAGTTGGTCGACGCAGTCAATGGGCTGCAATACTTGTTACCGTTGTTGGGGCCATTGTAATGGGTGGTGTCCTTGGTACCATGACATACTATGTGGTCAAATCTAAACACTCCCGGAGAGTGAGGAAGAAGAAAGAGAGGTATGAACATTATGCTTCGGATGATTCGGAAATAAATCCAATCTATGCAATTTGA 1728 0.511 MDNLHPLRNLRFAHHTTPLSEPTTPTPTTPRSTFFLSTSGKALLLSHSNSAKRPDTPRNKYVKQVTGRHNDTQLHLAAQRGDLSSVRQIHAELDSIMMGSFDFDSEVANIRSAIFNEVNELGETPLFTAADKGHLNVVLELLPHTTFESLSSKNRSGFDPLHIAASKGHLAIVLALLDYAPGLIKTVAQSNATPLISAATRGHADVVAELLSRDPTQLEMTRSNGKNALHLAARQGHVNVVKILLGKDPQLARRTDKKGQTALHMAVKGVSSTVVKLILGADAAIVMLPDKFGNTALHVATRKKRAEIVHELLLQPDTNVNTLTRDHKTALDLAEALPISEEILEIKECLIRYNAVKANDLNQPRDELRKTMTEIKKDVYFQLEQTRKTNKNVNGIATELRKLHRAGITNAANSVTVVAVLFAAVAFAAIFTVPGGDDNHGVAVMVHTASFKAFFISNALALFTSLSVVVVQITIVRGELKAERRVVEVINKLMWLASVCTSVSFISASYIVVGRRSQWAAILVTVVGAIVMGGVLGTMTYYVVKSKHSRRVRKKKERYEHYASDDSEINPIYAI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0055 575 MobiDBLite consensus disorder prediction 16 32 - -
Aed4g0055 575 MobiDBLite consensus disorder prediction 13 32 - -
Aed4g0055 575 ProSiteProfiles Ankyrin repeat region circular profile. 156 178 - -
Aed4g0055 575 ProSiteProfiles Ankyrin repeat region circular profile. 292 321 - -
Aed4g0055 575 ProSiteProfiles Ankyrin repeat profile. 292 325 IPR002110 GO:0005515
Aed4g0055 575 PANTHER CASKIN 37 561 - -
Aed4g0055 575 ProSiteProfiles Ankyrin repeat region circular profile. 224 245 - -
Aed4g0055 575 Pfam Domain of unknown function 408 512 IPR026961 -
Aed4g0055 575 ProSiteProfiles Ankyrin repeat profile. 156 178 IPR002110 GO:0005515
Aed4g0055 575 Gene3D - 192 391 IPR036770 -
Aed4g0055 575 Gene3D - 69 191 IPR036770 -
Aed4g0055 575 SMART ANK_2a 258 287 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 292 322 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 224 253 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 121 152 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 156 185 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 69 98 IPR002110 GO:0005515
Aed4g0055 575 SMART ANK_2a 190 219 IPR002110 GO:0005515
Aed4g0055 575 Pfam Ankyrin repeats (3 copies) 74 179 IPR002110 GO:0005515
Aed4g0055 575 Pfam Ankyrin repeats (3 copies) 191 248 IPR002110 GO:0005515
Aed4g0055 575 Pfam Ankyrin repeats (3 copies) 256 321 IPR002110 GO:0005515
Aed4g0055 575 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Aed4g0055 575 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 37 561 - -
Aed4g0055 575 SUPERFAMILY Ankyrin repeat 74 352 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0055 Aed-Chr4 360239 362792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0055 20 575 Miscellaneous Gene Families AT3G09550 70.187 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0055 - - gmx:100779710 880.167