Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0047 ATGTCTCGTCTAACACCACCCAACCCCGTTCTCGACGACAGGCTTCCTTTCTTCAACCAATCCATGGAGCTAGTCCAACCCCCAACCCGAACCAGATCCAGAACCCTCGGCGACCTCCTTAAACGCGTCGAAGACGCTCAAAACGACACTCCTCTTGCACCACTACCCCACCATGTTCTCGACCTCTCCTCCTCTTCCACCCACCCCTTTGTCCTCTCTTTCACCAACTTAACCTACAGCGTCAACCTCCGCCGCAAGTTCAACTTTTTTCCCGCCACCACCGTTTCCGCGCCCGACCACGAAACCAAACCCAACGGCACAAAGACTCTCCTCAACGACATATCCGGAGAGGCCAGGGATGGAGAGATCATGGCCGTCCTGGGCGCCAGCGGCTCCGGAAAGTCCACCTTAATCGACGCCCTCGCGGATAGGATCTCAAAAGAAAGCCTCAAAGGAACGGTGACCTTAAACGGCGACGTTCTGGAATCAAGCCTCTTGAAGGTTATCTCCGCTTACGTCATGCAAGACGACCTCCTCTTCCCCATGCTCACCGTCGAAGAAACCCTCATGTTCGCCGCTGACTTCAGACTCCCTCGCTCCTTCTCCAACTCCAAGAAAAAGGCACGCGTCCAAGCCCTAATCGACCAGCTCGGCCTCCGTTCCGCCGCCACCACCGTCATCGGTGACGAGGGCCACCGCGGCGTCTCCGGCGGCGAGCGCCGCCGCGTATCCATTGGTACCGACATCATCCACGACCCTATTGTGCTCTTCCTGGACGAACCAACCTCCGGCCTGGACTCCACCAGCGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATAGCTCAGAGCGGAAGCGTCGTCATCATGTCCATTCACCAACCTAGCTACAGAATCTTAAGCCTGTTAGACCACATGATATTCCTCTCCCGCGGTAACACTGTCTACAGCGGCACTCCGGCGAACCTTCCCGCCTTCTTCTCCGAGTTCGGCCACCCCATGCCGGAGAACGAGAACCGCACCGAATTCGCCCTCGACGTAATCCGCGAACTCGAAGAAGAACCCGGCGGTACCAAGAGTTTAGTAGACTTCAACAAATCCTGGCAGCTCAAAAATAAAAACTCAGCCCAGGCCGATAACGGGCCCAGTCCCAATCTCAAACCGAAACTATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCCGGGGCAAACTTGTGTCCGGCGCAAACAACTCAACGGCGTTAGTTTCAGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAGATGGCGGTGATAGGAAAACGGTCTCTAACTAACTCGCGGAGGATGCCAGAGTTATTCGGGATTCGGTTGGGTGCAGTTTTGGTGACGGGGGCAATCCTGGCAACAATCTTCTGGCACCTAGACGATTCTCCAAAAGGAGTGCAAGAACGGCTGGGGTTCTTCGCGTTCGCGATGTCCACCACGTTTTACACGTGCGCGGAAGCCTTGCCGGTGTTCCTCCAAGAGCGCTACATCTTCATGAGAGAAACCGCGCACAACGCATACCGTCGCTCATCCTACGTCCTTGCGCACTCAATTATTTCCCTCCCTTCGTTGCTCTTCCTCTCCCTCACCTTCGCGGCCACCACATTCTGGGCCGTGGGCCTGGCCGGTGGAAGTTTGGGCTTTTTCTTTTACTTCCTGACCATCGTGGCCTCGTTTTGGGCCGGGAACTCGTTCGTGACGTTTTTGTCCGGCGTGGTTTCGCACGTGATGATTGGATTCACCGTGGTAGTTGCGATTCTGGCGTACTTTCTCCTCTTCAGCGGGTTCTTCATAAGCAGGGACAGGATCCCTCCCTACTGGTTATGGTTCCACTACCTGTCGCTGGTGAAGTACCCGTACGAGGGAGTGTTGCAGAACGAGTTCGATGTGAAGACGCCTCGGTGTTTTGTGAGGGGGATACAGATGTTCGACAACACGCCGCTGGGGATGGTGCCGGAGTCCCTGAAGGTGGAGCTGCTGAAGAGCATGAGCAACACGCTGGGAATAAACATCACGAGCTCCACGTGCGTCGTCACCGGAGAGGATGTGCTGCAGCAGCAGGGGATCACGCAGCTTAGCAAGTGGAACTGCTTGTTCATCACCGTCGCTTGGGGATTCTTCTTTCGCTTCCTCTTTTATTTGGCGCTGCTCTTTGGGAGCAAGAACAAGAGGAGGTAG 2202 0.5577 MSRLTPPNPVLDDRLPFFNQSMELVQPPTRTRSRTLGDLLKRVEDAQNDTPLAPLPHHVLDLSSSSTHPFVLSFTNLTYSVNLRRKFNFFPATTVSAPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFAADFRLPRSFSNSKKKARVQALIDQLGLRSAATTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSVVIMSIHQPSYRILSLLDHMIFLSRGNTVYSGTPANLPAFFSEFGHPMPENENRTEFALDVIRELEEEPGGTKSLVDFNKSWQLKNKNSAQADNGPSPNLKPKLSLKDAISASISRGKLVSGANNSTALVSVPAFANPFWMEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGAILATIFWHLDDSPKGVQERLGFFAFAMSTTFYTCAEALPVFLQERYIFMRETAHNAYRRSSYVLAHSIISLPSLLFLSLTFAATTFWAVGLAGGSLGFFFYFLTIVASFWAGNSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWLWFHYLSLVKYPYEGVLQNEFDVKTPRCFVRGIQMFDNTPLGMVPESLKVELLKSMSNTLGINITSSTCVVTGEDVLQQQGITQLSKWNCLFITVAWGFFFRFLFYLALLFGSKNKRR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0047 733 Gene3D - 99 327 IPR027417 -
Aed4g0047 733 Pfam ABC transporter 111 263 IPR003439 GO:0005524
Aed4g0047 733 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524
Aed4g0047 733 Pfam ABC-2 type transporter 292 378 IPR043926 GO:0140359
Aed4g0047 733 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 95 335 IPR003439 GO:0005524
Aed4g0047 733 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 32 726 - -
Aed4g0047 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 328 IPR027417 -
Aed4g0047 733 Pfam ABC-2 type transporter 430 636 IPR013525 GO:0016020|GO:0140359
Aed4g0047 733 SMART AAA_5 120 312 IPR003593 -
Aed4g0047 733 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0047 Aed-Chr4 312106 314307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0047 110 295 Calmodulin-binding Proteins AT2G36910 29.630 9.02e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0047 K05681 - gmx:100803426 1285.4