Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0045 ATGCCTCGCCATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCGTCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTCAGCAGATACGGAAGAGTTCGAGGAGTGGATATGAAGAATGATTTCGCTTTTGTTGATTTTAGCGACCCTCGAGATGCTGATGATGCTAGATATAACTTGGATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGGAACTGTAAGAACAGTCCCAAAAAGTTGAGCAGGCGTGGACGGAGTCTTTCACGTTCACCAGTCAGGTCACGTTCACCTGTCAGGTCACGTTCTCCTCGTCGTGGCAGAAGCAGGGACCGAAGCTACAGCCGAGACCACAGCTACAGCCGATCAAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCCTCAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCTGACCAAAGCAGCCCACAGAAGAGAGGTGACACATCTCCTGGCAAAGATAGGCTGGCCACCCGACAAGATGGGTCTGACTGCAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGATCGTGAGGAGGGGGGCTATGATAGCCCTAAAGTTAATGGACGTAGCCGTAGCCCCAGCCGGAGCCCTAGGGATGATGATAGGAGCCCCATTGATGAGGATGATGACAACCACCGTCGCTCACAGTCACCTTGA 753 0.5153 MPRHDDKYGNTRLYVGRLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVEGSRIIVEFAKGNCKNSPKKLSRRGRSLSRSPVRSRSPVRSRSPRRGRSRDRSYSRDHSYSRSRSPVRRERSPVSEDRSQSPQPSKIRKHSASPDQSSPQKRGDTSPGKDRLATRQDGSDCSDGPRGKSRSPASPARDREEGGYDSPKVNGRSRSPSRSPRDDDRSPIDEDDDNHRRSQSP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0045 250 SUPERFAMILY RNA-binding domain, RBD 5 131 IPR035979 GO:0003676
Aed4g0045 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Aed4g0045 250 SMART rrm1_1 12 77 IPR000504 GO:0003723
Aed4g0045 250 MobiDBLite consensus disorder prediction 84 250 - -
Aed4g0045 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Aed4g0045 250 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 5 81 - -
Aed4g0045 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 81 - -
Aed4g0045 250 MobiDBLite consensus disorder prediction 173 193 - -
Aed4g0045 250 MobiDBLite consensus disorder prediction 201 216 - -
Aed4g0045 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 82 230 - -
Aed4g0045 250 MobiDBLite consensus disorder prediction 146 172 - -
Aed4g0045 250 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 82 230 - -
Aed4g0045 250 MobiDBLite consensus disorder prediction 224 250 - -
Aed4g0045 250 MobiDBLite consensus disorder prediction 117 145 - -
Aed4g0045 250 Gene3D - 2 96 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0045 Aed-Chr4 299892 303394 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0045 K12896 - gmx:100813237 219.55