Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0030 ATGAGAGATTTCGTGATCCTTGGCTCCTCCGTAGTAACTCCATTTTCTTCTTCTTCTTCTTCTCCGGCGCCACCTCATCAACACCGCCACCACCACCCCATAAAACCCCACAAGCCCTCTCTCCCAAAGCTCGCTCCTTTTTCCAATTGGAACATTTCCTGCGCTCTCCAAGCCCCCCAGCTCGCTCTCAACCACTGCGCTGTTGAGGGCGTGTTTGATTCCGCGGTCGACGCTGAGCTTCTGGCCAATGTGGTTCTGCTGGGAATTCGAGGGAAGAAGGTTCGGAGTGTCATTGACTCCCTCAACCAAGTTCAGGATCGAAGAATCTCTCTATCTGCTCATTTCAATGGCTCTGATATCACTGCAATTTCAAATGAGTGTTGCCGCTTGGTCACGTGCGGCCACATTCTGGAGGCTATTGAACTCATGGAGGTTCTCGCACGTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATGATTAATCGATGTGTTCTTAGTCGGAACCCAATTTTAGCTGTGAGGTATGCATGTCTTCTTCCCCATGCACATATATTGTTCTGCAATATTATATCAGAATTTGGCAAAAGGAGGGATTTAGTTTCTGCTTTGAAAGCGTATGAGGCGTCGAAGAAACACGTGGATACTCCCAATATGTACATATACCGTGCAACAATTGACGCTGTTGGTCTATGTCGTGATTACATCAAATCTAGGTACATATATGAGGATTTGCTTAATCAAAAGATCACTCCAAATATATACGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGAATCTCGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATGTCGCTCAAGACATTTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAGTTAGATGTCTTTACCTACAGTACAATTATAAAGATCTTTGCAGATGTAAAATTGTGGCAGATGGCTCTAAAAATCAAGCAAGACATGCTGTCTGCTGGTGTTTCGCTTAATATTGTTGCATGGTCATCATTAATCAATGCCTGCGCACATGCAGGGCTTGTAGAGCAGTCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGTGAACCTAATACACAGTGTTTCAACATCATTTTAAATGCATGCGTTGAAGCTTACCAATATGACAGGGCTTTTCGCTTTTACCATTCTTGGAAGGGAAAAAAGATGTTGGGGTCATCTGGTGAAAGCTACAATAGCAATATAGGGCATGGACGCATGCATAACATTACTTCTATGCCAAATGGCATTTCTAATTCACATATCTTGAGTTTTGCTGAGAGGTTCCCTTTCACACCAACTACAACAACATACAATATCTTGCTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGTCTGTCCCCTAATCAGATAAGCTGGTCTATTTTGATAGATATATGTGGAGCATCAGCAAATGTGGAGGGTGCCATTGAGATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAACTTTATATGAAGAAATGAAAAGCTACGATATACGTCCAAATTGGGTGACATATAACACACTTTTAAGGGCACGCAGTAAATACGGCTCCCTACACGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGTACAAACCCAATGACTACTATCTGGAAGAACTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGATAACAGAGAGAAGCAGGGAGAATTTTCTTCCAGCAATAAATCTGAATCAGAGAGACCCCATAGTTTACTTCTTGAAAAAATTGCAGCTCACCTGCTAAAGAGGGTGGCTGACATCCTAGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGAATGATCAAAGAGAATTACTGTTTAGGACGTTCAGTAAATGATGATATCTTGATCATCATAGGAGCTACTAAAGTAGACGAAAATCCATCCAAACACATATTAGAAGTGCAAGAAGCAATAATGAAACTTCTTAGGAATGAGTTGGGGCTTGAAGTTTTTCCAGCCAGAACCAGATTAGCACTAAGTGACACAGCAAAGTTAGAGTACCCCCCCAACCGTTCAAATCTCAACATAGAAGCACTACCAGGAGATAATGCATTGGGGTTTAAGACAAGGAGACCTGGACTTCTAGTGAGGTTGAAGGTCACCAAAAAATCGTTATACAGATGGTTGCGCCGGAAGTAA 2421 0.4176 MRDFVILGSSVVTPFSSSSSSPAPPHQHRHHHPIKPHKPSLPKLAPFSNWNISCALQAPQLALNHCAVEGVFDSAVDAELLANVVLLGIRGKKVRSVIDSLNQVQDRRISLSAHFNGSDITAISNECCRLVTCGHILEAIELMEVLARFQISIRELVQPSDMINRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEASKKHVDTPNMYIYRATIDAVGLCRDYIKSRYIYEDLLNQKITPNIYVFNSLMNVNSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDVAQDIYRELKHLESVGQLKLDVFTYSTIIKIFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQSIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFYHSWKGKKMLGSSGESYNSNIGHGRMHNITSMPNGISNSHILSFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSILIDICGASANVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTLYEEMKSYDIRPNWVTYNTLLRARSKYGSLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVIQDNREKQGEFSSSNKSESERPHSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVVLAVLRMIKENYCLGRSVNDDILIIIGATKVDENPSKHILEVQEAIMKLLRNELGLEVFPARTRLALSDTAKLEYPPNRSNLNIEALPGDNALGFKTRRPGLLVRLKVTKKSLYRWLRRK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0030 806 Pfam Pentatricopeptide repeat domain 529 586 IPR002885 -
Aed4g0030 806 Pfam Pentatricopeptide repeat domain 219 265 IPR002885 -
Aed4g0030 806 Pfam PPR repeat family 362 409 IPR002885 -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 613 IPR002885 -
Aed4g0030 806 PANTHER OS03G0284900 PROTEIN 68 795 - -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 578 614 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 508 542 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 291 316 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Aed4g0030 806 TIGRFAM PPR: pentatricopeptide repeat domain 544 577 IPR002885 -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Aed4g0030 806 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 68 795 - -
Aed4g0030 806 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Aed4g0030 806 Pfam PPR repeat 329 359 IPR002885 -
Aed4g0030 806 MobiDBLite consensus disorder prediction 13 38 - -
Aed4g0030 806 Gene3D Tetratricopeptide repeat domain 459 658 IPR011990 GO:0005515
Aed4g0030 806 Gene3D Tetratricopeptide repeat domain 319 450 IPR011990 GO:0005515
Aed4g0030 806 Gene3D Tetratricopeptide repeat domain 187 318 IPR011990 GO:0005515
Aed4g0030 806 Pfam PPR repeat 284 314 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0030 181 639 Miscellaneous Gene Families AT4G11690 23.285 9.86e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0030 - - gmx:100794606 1390.17