Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2676 ATGATACTCAGGCGATTGTTACACAATGCTGTTTCTACCCAGTTAGCTTTGTCAGAGCAGTTGCTACATCATCACTTTAACTCATCTCACCACCGCCTCCAATTTCCACCTTTGAATTTTGAATATAATCGATACAAAGATTCTTGCAGCGTGGAAGATGCCCATCAGCTTCATCTGCTGATCTACAAAACTGGTCTTACCCGTGATGTTTTCTGGTGTAATACTCTTATCAACATATATGTCAGAGTTGGCAATCTGATTTCCTCACAGAAGCTGTTTGATGAAATGCCACAAAAGAACCTCGTCTCTTGGTCCTGTTTGGTTTCTGGATATGCACAAAATGGCATGCCTGATGAGGCATGTATGTTATTCAGAGGGATCATTTCAGCTGGCCTCTTACCAAATCACTATGCTATTGGCAGTGCTCTTCGAGCGTGCCAAGAGCTTGGTCCAAATAAGCTTAAACTCGGGATGGAGATTCATGGCTTAATTTCCAAATCTCCATATGCTTTGGACATGGTGTTGTCTAATGTGCTCATGTCCATGTATTCACATTGCTCAGCTTCCATTGATCATGCCCGTCGTGTTTTTGATGAAATAAAAATCAAAACTTCTGCATCCTGGAATTCTATCATTTCTGTTTATTGTCGTAGGGGAGATGCAATTTCTGCTTTTAAGCTATTTTCAAGCATGCAAAGGGATCCTACTGAACTTACCTGCAGGCCTAATGAATATACCTTCTGTAGCTTAGTAACTGTTGCATGCTCTCTGGTTGACTGTGGACTGACTTTGCTTGAGCAGATGCTAGCCACGATTGAAAAGTCTAGCTTTGTACAAGATTTGTATGTTGGTAGTGCATTGGTCAGCGGGTTTGCAAGATATGGTTTAATAGATTCTGCTAAAATGATTTTTGAGCAGATGGGTGATCGTAATGCAGTGACTATGAATGGGTTAATGGTTGGACTGGCAAGGCAGCACCAGGGTGAAGAAGCAGCTAAGATATTCAAGGAAATGAAAGATTTAGTTGAAATAAATGCATCATCGTATGCAGTTCTTTTAAGTGTTTTTACTGAATTTTCAAATTTAAAGGAAGGGAAGAGAAAGGGTCAAGAGGTTCATGCTTATCTCATTCGCAATGCCTTGGTTGATGTCTGGATTTTGATTGGAAATGCTCTCGTCAATATGTTTGCAAAATGCAATGCCATTGATAATGCTCGGTCAATTTTTCAACTCATGCCCAGTAAAGATACCGTTTCATGGAACTCTATAATCTCTGGCCTTGACCACAATGAGCGATTTGAGGAAGCAGTTGCCTGTTTCCATACAATGAGGAGAAATGGAATGATGCCCTCAAAGTTCTCAGTTATTAGTACTTTGAGTTCATGTGCAAGTTTGGGTTGGATCATGTTAGGACAACAGATACACGGGGAAGGGATCAAATGCGGGCTTGATTTGGACGTTTCAGTTTCAAATGCTCTTCTGACATTATATGCTGAAACTGATTATATGGATGAATGTCAGAAAGTTTTCTTTCTAATGCCAGAGTATGATCAAGTTTCTTGGAATTCTTTTATTGGTGCACTAGCAACTTCAGAGGCATCAGTTTTACAGGCTATAAAATATTTCCTGGAGATGATGCAAGCTGGATGGAAACCCAACAGAGTAACATTTATAAATATTCTATCTGCAGTTTCTTCTCTTTCTCTTCTTGACTTGGGCCGTCAAATTCATGCTTTAATCTTAAAGCACTCTGTTGCTGATGACAATGCTATTGAGAATACACTTCTAGCTTTCTATGGAAAGTGTGAGCAGATGGAGGACTGTGAAATTATCTTTTCTAGAATGTCTGAGCGAAGAGATGAAGTCAGTTGGAATTCCATGATTTCTGGATATATACACAATGGCATCCTGCATAAGGCAATGGATTTGGTATGGCTTATGATGCAAAGGGGCCAGAGATTGGATGACTTCACGCTTGCCACCGTTCTTAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGTATGGAAGTTCATGCATGTGCTGTAAGGGCTTGTTTAGAATCTGAAGTTGTTGTTGGTAGTGCACTAGTTGACATGTATGCAAAATGTGGAAAGATAGATTATGCATCGAGATTCTTTGAATTGATGCCTGTGAGGAATATATATTCTTGGAATTCAATGATTTCTGGTTATGCACGCCATGGACATGGAGGAAAAGCTCTAAAGCTTTTTACACAAATGAAACAGCATGGCCAACTGCCAGATCATGTCACCTTTGTTGGGGTCTTATCGGCCTGTAGTCATGTAGGGTTAGTTGATAAAGGATTTGAGCATTTCAAATCAATGGGAGAAGTATATGGACTAGCTCCTCGAATAGAGCACTTCTCATGTATGGTAGACCTCCTTGGGCGAGCAGGTGATGTTAATAAACTGGAGGAATTCATCAAAACAATGCCAATGGATCCTAATGCCCTTATTTGGAGGACAATTTTAGGAGCATGTTGTCGAGCTAATAGCCGTGATACAGAGCTAGGGCAGAGGGCTGCCAGGATGCTTATTGAATTAGAGCCGCAGAATGCAGTGAACTATGTTCTTCTTTCTAACATGCATGCTGCTGGTGGGAAGTGGGAAGATGTGGCAGAGGTTAGATTGGCAATGAGGAATGCAGCAGTTAAGAAGGAAGCTGGGCGTAGTTGGGTCACCATGAAGGATGGAGTTCATGTGTTTGTGGCTGGAGATCAAACACACCCAGAAAAAGAAAAAATCTATGAAAAACTCAAGGAGATAATGAACAAAATGAGGGACGCGGGATATGTGCCTGAAACCAAATATGCACTCTATGATCTTGAGCTTGAAAACAAAGAAGAGCTTCTCAGCTATCATAGTGAGAAACTAGCGATTGCTTTTGTTCTCACTCGCCAATCTGAGCTACCAATTAGGATAATGAAGAACCTTCGGGTTTGTGGTGACTGTCACACTGCTTTCAAATACATATCAAAGATTGTTAATCGGCAGATAATTTTACGAGATTCAAATAGATTTCACCATTTTGATGGTGGCATGTGTTCTTGTGGGGATTATTGGTGA 3090 0.4071 MILRRLLHNAVSTQLALSEQLLHHHFNSSHHRLQFPPLNFEYNRYKDSCSVEDAHQLHLLIYKTGLTRDVFWCNTLINIYVRVGNLISSQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNKLKLGMEIHGLISKSPYALDMVLSNVLMSMYSHCSASIDHARRVFDEIKIKTSASWNSIISVYCRRGDAISAFKLFSSMQRDPTELTCRPNEYTFCSLVTVACSLVDCGLTLLEQMLATIEKSSFVQDLYVGSALVSGFARYGLIDSAKMIFEQMGDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSVFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNMFAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMMPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDYMDECQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLDLGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYIHNGILHKAMDLVWLMMQRGQRLDDFTLATVLSACASVATLERGMEVHACAVRACLESEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDKGFEHFKSMGEVYGLAPRIEHFSCMVDLLGRAGDVNKLEEFIKTMPMDPNALIWRTILGACCRANSRDTELGQRAARMLIELEPQNAVNYVLLSNMHAAGGKWEDVAEVRLAMRNAAVKKEAGRSWVTMKDGVHVFVAGDQTHPEKEKIYEKLKEIMNKMRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSELPIRIMKNLRVCGDCHTAFKYISKIVNRQIILRDSNRFHHFDGGMCSCGDYW 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2676 1029 Pfam PPR repeat family 721 768 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat family 415 463 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat family 620 667 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat family 204 255 IPR002885 -
Aed3g2676 1029 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 587 972 - -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 313 340 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 102 131 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 285 310 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 73 100 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 593 618 IPR002885 -
Aed3g2676 1029 Pfam PPR repeat 491 515 IPR002885 -
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 8 150 IPR011990 GO:0005515
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 569 680 IPR011990 GO:0005515
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 256 376 IPR011990 GO:0005515
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 151 255 IPR011990 GO:0005515
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 382 473 IPR011990 GO:0005515
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 474 568 IPR011990 GO:0005515
Aed3g2676 1029 Pfam E+ motif 907 934 IPR046849 -
Aed3g2676 1029 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Aed3g2676 1029 TIGRFAM PPR: pentatricopeptide repeat domain 102 135 IPR002885 -
Aed3g2676 1029 TIGRFAM PPR: pentatricopeptide repeat domain 207 233 IPR002885 -
Aed3g2676 1029 TIGRFAM PPR: pentatricopeptide repeat domain 723 756 IPR002885 -
Aed3g2676 1029 TIGRFAM PPR: pentatricopeptide repeat domain 622 654 IPR002885 -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 552 IPR002885 -
Aed3g2676 1029 PANTHER OS01G0913400 PROTEIN-RELATED 52 151 - -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Aed3g2676 1029 PANTHER OS01G0913400 PROTEIN-RELATED 587 972 - -
Aed3g2676 1029 PANTHER OS01G0913400 PROTEIN-RELATED 238 488 - -
Aed3g2676 1029 PANTHER OS01G0913400 PROTEIN-RELATED 131 233 - -
Aed3g2676 1029 PANTHER OS01G0913400 PROTEIN-RELATED 486 585 - -
Aed3g2676 1029 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 238 488 - -
Aed3g2676 1029 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 52 151 - -
Aed3g2676 1029 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 131 233 - -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 721 755 IPR002885 -
Aed3g2676 1029 Pfam E motif 842 901 IPR046848 -
Aed3g2676 1029 Pfam DYW family of nucleic acid deaminases 938 1029 IPR032867 GO:0008270
Aed3g2676 1029 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 486 585 - -
Aed3g2676 1029 Gene3D Tetratricopeptide repeat domain 738 956 IPR011990 GO:0005515
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Aed3g2676 1029 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2676 Aed-Chr3 28446847 28449936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2676 124 737 Glycoside Hydrolase AT3G49170 25.960 4.82e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2676 - - gmx:100800858 1928.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2676 3 28446847 28449936 Aed3g2676 3 28446847 28449936 ECH