Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2597 ATGGCGCGGGTGCTGTACATGGGTTTACCTTTACCCGCAGAACCCCATAAAACTGCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGAAGCCATTGAAGCTTCTCCATAGAACTCGCAGCACCAACATATCCATTCCCACCACTGCCAAAGGCAGTGGTAATCGTTTGCCCAAAACCCAGAAGCTGAATTTAGAGATTTCTCCTCATAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGTGCTTTTGCCGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACACTTGGCTTTCGCACTCGGGAATTGAATCAACACGATCTTAGATTGGTCACAGAAGTTGTTGGGGGCACGATTCGTTGGAGAAGATATCTTGATCATCTTATCAGTTCACTATGTCATGACAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAAATTGTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAACGTGAAGCTTGCTAAATTTGCTCTCAGACCTGGAGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTGAAGGAGAATGCAACTCTTCCTTTGCCTAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTCTACTCACATCCAGTTGTCCCACACAAACTCTCATTGCATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGACTATCATTCAAGCCGATCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCATTGATTGTTGTGCTGCCCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCAGTTGATGTGAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACTGCCATCCATGCTGATCTTCGTACATTACCTGATAGTGTACAGCTTAAGTGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGTTGGAACAGGAAGCTGGAGGATGTGGAACAACTGAAGAAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTTAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGACAGGGTAGCGGCATTTCTTGTAAGACATCCGGATTTCCACACTGATCCTGTAGACAAATTTGTTTCTCCTGATTTTGTGACAAGTAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGCTCCTTTGCAGCTCGTTTAGTACGAGATTTATAG 1461 0.4422 MARVLYMGLPLPAEPHKTAPSSSSSSSSSSSSKPLKLLHRTRSTNISIPTTAKGSGNRLPKTQKLNLEISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNQHDLRLVTEVVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKENATLPLPKVEGDDRAQARALATLYSHPVVPHKLSLHLDEFVRIKTGLQTIIQADLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSVQLKCNKVLLDAPCSGLGVLSKRADLRWNRKLEDVEQLKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHTDPVDKFVSPDFVTSSGFFFSNPVKHSLDGSFAARLVRDL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2597 486 Gene3D - 77 218 IPR035926 -
Aed3g2597 486 Pfam 16S rRNA methyltransferase RsmB/F 288 482 IPR001678 GO:0008168
Aed3g2597 486 MobiDBLite consensus disorder prediction 17 63 - -
Aed3g2597 486 Gene3D Vaccinia Virus protein VP39 222 484 IPR029063 -
Aed3g2597 486 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 249 484 IPR029063 -
Aed3g2597 486 SUPERFAMILY NusB-like 109 241 IPR035926 -
Aed3g2597 486 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 25 242 IPR023267 GO:0001510
Aed3g2597 486 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 243 485 IPR023267 GO:0001510
Aed3g2597 486 Pfam NusB family 104 210 IPR006027 GO:0003723|GO:0006355
Aed3g2597 486 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 25 242 - -
Aed3g2597 486 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 243 485 - -
Aed3g2597 486 MobiDBLite consensus disorder prediction 7 63 - -
Aed3g2597 486 PRINTS Viridiplantae FMU-related RCMT signature 217 230 IPR023268 -
Aed3g2597 486 PRINTS Viridiplantae FMU-related RCMT signature 78 101 IPR023268 -
Aed3g2597 486 PRINTS Viridiplantae FMU-related RCMT signature 102 118 IPR023268 -
Aed3g2597 486 PRINTS RNA (C5-cytosine) methyltransferase signature 366 378 IPR023267 GO:0001510
Aed3g2597 486 PRINTS RNA (C5-cytosine) methyltransferase signature 467 484 IPR023267 GO:0001510
Aed3g2597 486 PRINTS RNA (C5-cytosine) methyltransferase signature 416 432 IPR023267 GO:0001510
Aed3g2597 486 PRINTS RNA (C5-cytosine) methyltransferase signature 269 283 IPR023267 GO:0001510
Aed3g2597 486 PRINTS RNA (C5-cytosine) methyltransferase signature 298 308 IPR023267 GO:0001510
Aed3g2597 486 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 209 485 IPR001678 GO:0008168
Aed3g2597 486 CDD AdoMet_MTases 296 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2597 Aed-Chr3 27972432 27978468 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2597 K03500 - gmx:100779327 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2597 3 27972432 27978468 Aed3g2597 3 27972432 27978468 ECH