Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2587 ATGGCGCCTGTGGCAGCGAGGAGCACAGGCGCCATAGCTGTCGGTGTTGGTGCTGCTATCTTCATCTCGGTTGCCCTCACCACTTACTTAATTTGTGAGCGCCGCCGCTCTAAGAAGAAATCACGGAGGAAGGGAGTGGTGGACGCCATAGGCAACACACCTTTGATTCTGATCAACAGCCTCTCCGCCGCCACTGGTTGCCAAATTCTCGGCAAGTGCGAGTTTTTAAATCCCGGAGGCAGCGTCAAAGACCGCGTTGCTCTTCATATTATTCAAGAAGCTCTAGAATCTGGGCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGTAGCACTGCCATTAGCATTGCCACTGTTGCTCCTGCCTTTGCCTGCAAAACCCTCGTTGTTATACCCGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACCCACAGAGACCATTTTGTCAATATTGCAAGAAGACGGGCATCTCAAGCAAATGACTTTGCATTCAACCGTGGAAATTCACAATCCGATATATCTGATGGATGCAATTACAGCTCTCAAGGTGGCTTTTTTGCTGATCAGTTTGAGAACCTAGCCAACTTCAGGGCCCATTATGAGGGTACAGGGCCTGAGATTTGGGAACAGACCAATGGAAATATACATGCATTTGTTGCAGCAGCAGGCACTGGTGGTACTATCGCTGGTGTTTCTACCTTTCTTCAGGAAAAGAATCCAAACATCAAGTGCTTCCTGGTAGATCCCCCTGGCTCTGGTTTGTTTAATAAGGTAACTAGGGGAGTGATGTACACCAAAGAGGAAGCAGAAGGAAGAAGACTCAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGATAACAAGGAATTTTGAAATGGCAAAACTTGATGGAGCATTTAGAGGCACCGATAGGGAGGCTGTTGAAATGTCTAGGTTTCTTTTGAAGAACGATGGGCTCTTCCTAGGGAGTTCTTCCGCAATGAACTGTGTTGGAGCAGTTAGAGTAGCGCAAGCAATTGGCCCTGGTCATACAATTGTAACCATTCTATGTGACAGTGGAATGAGACATTTGAGCAAATTCTATAATGCTGCATACTTGTCTCAGCTTGGTTTGACACCGAAAGCAACTGGTTTGGAGTTCTTAGGCATCAAATGA 1221 0.4668 MAPVAARSTGAIAVGVGAAIFISVALTTYLICERRRSKKKSRRKGVVDAIGNTPLILINSLSAATGCQILGKCEFLNPGGSVKDRVALHIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAFACKTLVVIPDDAAIEKSQILEALGATVERVRPVSITHRDHFVNIARRRASQANDFAFNRGNSQSDISDGCNYSSQGGFFADQFENLANFRAHYEGTGPEIWEQTNGNIHAFVAAAGTGGTIAGVSTFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFEMAKLDGAFRGTDREAVEMSRFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYNAAYLSQLGLTPKATGLEFLGIK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2587 406 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 38 387 IPR036052 -
Aed3g2587 406 Gene3D - 50 379 IPR036052 -
Aed3g2587 406 PANTHER CYSTATHIONINE BETA-SYNTHASE 33 405 - -
Aed3g2587 406 CDD CBS_like 51 380 - -
Aed3g2587 406 PANTHER CYSTEINE SYNTHASE-RELATED 33 405 - -
Aed3g2587 406 Pfam Pyridoxal-phosphate dependent enzyme 48 373 IPR001926 -
Aed3g2587 406 Gene3D - 80 214 IPR036052 -
Aed3g2587 406 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 72 90 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2587 Aed-Chr3 27939019 27944870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2587 50 380 Miscellaneous Gene Families AT3G04940 29.730 4.72e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2587 K01738 - gmx:100799081 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2587 3 27939019 27944870 Aed3g2587 3 27939019 27944870 ECH